BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0027.p
         (72 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311469|ref|YP_003775561.1| oxidative stress resistance two...   149   4e-38
gi|300310849|ref|YP_003774941.1| two component transcription reg...    62   1e-11
gi|300311515|ref|YP_003775607.1| two component response regulato...    59   8e-11
gi|300313830|ref|YP_003777922.1| response regulator protein [Her...    52   8e-09
gi|300313665|ref|YP_003777757.1| two component transcription reg...    52   8e-09

>gi|300311469|ref|YP_003775561.1| oxidative stress resistance two
           component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 253

 Score =  149 bits (376), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1   VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 60
           VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG
Sbjct: 182 VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 241

Query: 61  LGYVFIPEGKPR 72
           LGYVFIPEGKPR
Sbjct: 242 LGYVFIPEGKPR 253


>gi|300310849|ref|YP_003774941.1| two component transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 248

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 1   VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 60
           +LKVF  +  + L+R++L+E+ +GRE + FDRS+D+QISRLR+ +  D   P  I+TV  
Sbjct: 171 LLKVFLDHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRN 230

Query: 61  LGYVF 65
            GYV 
Sbjct: 231 EGYVL 235


>gi|300311515|ref|YP_003775607.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score = 58.9 bits (141), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 44/68 (64%)

Query: 1   VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 60
           +L+V ARNA +P+S++ L E   GR    FDR++DV +S +R+ I    ++   IQTV+ 
Sbjct: 162 LLEVLARNAGKPVSKQHLSEQGLGRPLARFDRNIDVHLSSIRQKIAALGSDKSCIQTVYR 221

Query: 61  LGYVFIPE 68
           LGY FI E
Sbjct: 222 LGYQFIKE 229


>gi|300313830|ref|YP_003777922.1| response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score = 52.4 bits (124), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 36/65 (55%)

Query: 1   VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 60
           +LK F  +    L R  L E  RGR+    DRSLDVQIS+LR  +      P  I+TV G
Sbjct: 164 LLKYFVEHPGDVLDRNVLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRG 223

Query: 61  LGYVF 65
            GYVF
Sbjct: 224 AGYVF 228


>gi|300313665|ref|YP_003777757.1| two component transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 52.0 bits (123), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 1   VLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWG 60
           VL+    + R+ LSR+ L+    G+E   FDRS+DV ISRLR+ +  +P  P  I+TV  
Sbjct: 168 VLRALLEHPRRALSRDFLLNTVYGKEAMPFDRSIDVCISRLRQQLGDNPREPALIRTVRN 227

Query: 61  LGYVFIPE 68
            GY+ + +
Sbjct: 228 TGYMLMAD 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.142    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 227,273
Number of extensions: 7440
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 5
Length of query: 72
Length of database: 1,619,870
Length adjustment: 44
Effective length of query: 28
Effective length of database: 1,411,530
Effective search space: 39522840
Effective search space used: 39522840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)