BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0025.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311468|ref|YP_003775560.1| oxidative stress resistance two...   204   5e-54
gi|300311467|ref|YP_003775559.1| secreted protein [Herbaspirillu...   107   1e-24

>gi|300311468|ref|YP_003775560.1| oxidative stress resistance two
           component transmembrane sensor histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score =  204 bits (520), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 110/127 (86%), Positives = 119/127 (93%)

Query: 1   MGDDTQFASGVNDVDGFWISFKIDEDAYWLMLDRGRLDRTSSLQWLGWGSIALVLSLIGA 60
           + ++T FAS VNDV+GFWISF ID+D YWLMLDRGRLDRTSSLQWLGWGSIAL LSLIGA
Sbjct: 118 LDENTLFASSVNDVEGFWISFNIDDDKYWLMLDRGRLDRTSSLQWLGWGSIALFLSLIGA 177

Query: 61  VFISTLINQPLARLTAAARAIAKGKQPDPLPESGPTEIREANLSFNQMVADLDRIESDRA 120
           VFISTLINQPLARLTAAARAIAKG+QP+PLPESGPTEI EAN SFNQMVADL+RIESDRA
Sbjct: 178 VFISTLINQPLARLTAAARAIAKGRQPEPLPESGPTEIEEANRSFNQMVADLNRIESDRA 237

Query: 121 VILAGIS 127
           +ILAGIS
Sbjct: 238 LILAGIS 244


>gi|300311467|ref|YP_003775559.1| secreted protein [Herbaspirillum
           seropedicae SmR1]
          Length = 186

 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 80/132 (60%), Gaps = 9/132 (6%)

Query: 151 QTRVDRTLSIPAAGSPA-----IASPHAAVIAPPPQNMPPPPPASRGPSGSYAADAMGAT 205
           Q+  DR LS+P  G+       I SP    I P      P    + GP GSYA++A G  
Sbjct: 24  QSYADRNLSLPQGGNEGRRPIVILSP----IVPAAPAAVPAATPTNGPVGSYASEAAGPD 79

Query: 206 IVAKNADYETTFAIGAPVPPGASISNVSWKYGLSEKPVGFEAILCWNNRERCWNVTNNAS 265
           I A+NADY T F +   VPPG++IS VSW+Y +S KP GFEA+LCW +   CW+VT+  +
Sbjct: 80  IRARNADYVTQFRVVGTVPPGSTISKVSWRYTVSHKPPGFEALLCWQDAGSCWHVTDANT 139

Query: 266 GSTAAFNGKDAA 277
           GST  FNG+DA+
Sbjct: 140 GSTDFFNGRDAS 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 748,621
Number of extensions: 26807
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)