BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0021.p
         (362 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillu...   563   e-162
gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillu...   132   4e-32

>gi|300311465|ref|YP_003775557.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 359

 Score =  563 bits (1451), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 274/360 (76%), Positives = 308/360 (85%), Gaps = 3/360 (0%)

Query: 1   MPRPIVATIDISALQHNLAVAKSHAPHAKAWAVVKAQAYGHGLGRAIRAFAEADGLALVE 60
           MPRPIVA+I ISALQHNLAVA++HAP A+ W V+KA  YGHGL RA+R FA ADGLAL+E
Sbjct: 1   MPRPIVASISISALQHNLAVARAHAPGARVWGVLKANGYGHGLERAMRGFAAADGLALIE 60

Query: 61  VNYAVQLRELGWTKPILLLEGFFDADDIPVLAQHGLQFAVHCDEQIALLEAAGLDAQTAR 120
            +YAV+LRELGWTKPILLLEGFFDADD+PVLAQH +QFAVHC+EQIA LEA       A 
Sbjct: 61  PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCEEQIAQLEAF---TAAAS 117

Query: 121 FDVHLKMNSGMNRLGFKPEVYRAAYERLQKLDCVRSITMITHFANADDPANPDLPLAEQV 180
              HLKMNSGMNRLGFKPE YRAAY RLQK+  V SIT++THFANADD  NP LPLAEQV
Sbjct: 118 LHAHLKMNSGMNRLGFKPETYRAAYARLQKIPSVASITLMTHFANADDAGNPLLPLAEQV 177

Query: 181 RRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGLRPAMTL 240
           RRF A + GL G  S  NSAADLMHA+LA +WVR GVMLYGGTPGGG+A +FGLR AMTL
Sbjct: 178 RRFQAGSEGLDGPRSLCNSAADLMHAELANDWVRPGVMLYGGTPGGGSAADFGLRAAMTL 237

Query: 241 ESRIIGVQEIGPGDAVGYGSRFVADKDMKIGIVACGYADGYPRHAPNNTPVIVDGVRTGT 300
           ESRIIG+Q++  G+A+GYGSRFVADK MKIG+VACGYADGYPRHAPN TPV+VDGV+TGT
Sbjct: 238 ESRIIGIQQVPAGEAIGYGSRFVADKPMKIGVVACGYADGYPRHAPNGTPVLVDGVKTGT 297

Query: 301 IGRVSMDMLTVDLSDIPDAGVGSRVVLWGEELPIDEVAFAAGTIGYELMCALAPRVTVQE 360
           +GRVSMDMLTVDL+ IPDA VGS+V LWG +LPIDEVA+AAGTIGYELMCALAPRV V+E
Sbjct: 298 VGRVSMDMLTVDLTHIPDADVGSQVELWGSKLPIDEVAYAAGTIGYELMCALAPRVAVRE 357


>gi|300313242|ref|YP_003777334.1| alanine racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 368

 Score =  132 bits (332), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 176/363 (48%), Gaps = 26/363 (7%)

Query: 8   TIDISALQHNLAVAKSHAPHAKAWAVVKAQAYGHGLGRAIRAFAEADG--LALVEVNYAV 65
           TID+ A+  N     +    A+  AVVKA AYG G    +RA  +A      +  V+  V
Sbjct: 10  TIDLPAIVANWKTLSARVAPARCGAVVKADAYGLGATMVVRALLDAGCREFFVALVSEGV 69

Query: 66  QLREL---GWTK--PILLLEGFFDADDIPVLAQHGLQFAVHCDEQIALLE--AAGLDAQT 118
            L++     W K   + +L G    D++  L  +GL   ++  EQ+   +  A  LD   
Sbjct: 70  SLKQTLADRWPKGARLHILNGTLPGDELLCL-HYGLTPVLNSLEQVRSWQGYARQLDFPL 128

Query: 119 ARFDVHLKMNSGMNRLGFKPEVYRAAYERLQKLDCVRSITMITHFANADDPANP----DL 174
           A     L++++GM RLG  P       E    L  +    +++H  +A++ ANP     L
Sbjct: 129 A---AALQVDTGMARLGLAPAEVAQLTESRAGLAGIAPTFLMSHLVSAEETANPLNQHQL 185

Query: 175 PLAEQVRRFNAATAGLAGAHSAANSAADLMHADLAYEWVRAGVMLYGGTPGGGTAKEFGL 234
                +RR     AG       ANS+   + AD  +  VR G  LYG  PGG  A    +
Sbjct: 186 ERFVAIRRHWPEIAG-----CLANSSGIFLGADFHFGCVRPGAALYGVHPGG--AGPNPM 238

Query: 235 RPAMTLESRIIGVQEIGPGDAVGYGSRFVADKDMKIGIVACGYADGYPRHAPNNTPVIVD 294
           RP + L++ +I  +E+  G++VGY   + A +  ++G +A GYADGY R A N   + ++
Sbjct: 239 RPVLRLQAPLIQWRELQAGESVGYNHTWQASRPTRVGTIALGYADGYLRSASNRGVLRLE 298

Query: 295 GVRTGTIGRVSMDMLTVDLSDIPDAGV--GSRVVLWGEELPIDEVAFAAGTIGYELMCAL 352
           GV    IGRVSMD +TVDLS I  A +  G    +   +  I+ +A  AGT  YE++ +L
Sbjct: 299 GVEAPLIGRVSMDSITVDLSAIDPARLRPGLLFDVLDAQQDINALAVQAGTNAYEILTSL 358

Query: 353 APR 355
             R
Sbjct: 359 RHR 361


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,214,336
Number of extensions: 54691
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,212,660
Effective search space: 334694160
Effective search space used: 334694160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)