BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0017.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311462|ref|YP_003775554.1| uracil-DNA glycosylase [Herbasp...   281   3e-77

>gi|300311462|ref|YP_003775554.1| uracil-DNA glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 340

 Score =  281 bits (719), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 144/194 (74%), Positives = 161/194 (82%), Gaps = 6/194 (3%)

Query: 9   SARVLEEIGVGPVWVRRHLAVEAAXPPGFMPYDEEDDEPAVRINPAIA---TMDWSKLKE 65
           SA V EE G  P W+   +   A+  P  +P + EDDEP   ++P IA    MDW +LKE
Sbjct: 101 SAPVQEE-GGPPAWLD-EMDFAASLEPVLIP-EGEDDEPMPAVDPVIARIKQMDWPQLKE 157

Query: 66  TVAECRQCGLCNGRKKTVFGVGDEKARWLFIGEGPGRNEDAQGEPFVGPAGKLLDNMLVA 125
            VA+CR+CGLC GRKKTVFGVGDEKA+WLFIGEGPGRNED QGEPFVGPAGKLLDNMLV+
Sbjct: 158 QVADCRRCGLCQGRKKTVFGVGDEKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVS 217

Query: 126 MGLKRGENAYIANIVKCRPTDEGGKDRPPSPQEVASCLPYLQRQIALIQPTVLVALGKTA 185
           MG+KRG+NAYIANIVKCRPTDE G+DRPPSPQEVASCLPYLQRQI LIQPTVLVALGKTA
Sbjct: 218 MGVKRGDNAYIANIVKCRPTDENGRDRPPSPQEVASCLPYLQRQIELIQPTVLVALGKTA 277

Query: 186 ALSLLGLDPATPVS 199
           A+SLLGLDP TPV+
Sbjct: 278 AISLLGLDPTTPVA 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,121
Number of extensions: 30904
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)