BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0015.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311460|ref|YP_003775552.1| molecular chaperone transmembra...   281   2e-77

>gi|300311460|ref|YP_003775552.1| molecular chaperone transmembrane
           [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  281 bits (720), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/240 (66%), Positives = 184/240 (76%), Gaps = 5/240 (2%)

Query: 1   MSIILAIETSTELASAALLHGDELIFRESMGVQTHSETILPMVQQLLAQAGIALSRCDAI 60
           M+ ILAIETSTELASAALL+  +L+ R+S G QTHS+ ILPM+QQLLA+AG+AL++CDA+
Sbjct: 1   MTTILAIETSTELASAALLYQGKLLSRQSAGAQTHSDAILPMIQQLLAEAGLALAQCDAL 60

Query: 61  AFGVGPGSFTGVRTACGVVQGLAFGSDLPVAPVVTLEAMAQACLETTQGVANDVLAVLDA 120
           AFGVGPGSFTGVRTACGVVQGLAFG D PV PVVTLEA AQAC       A +VLA+LDA
Sbjct: 61  AFGVGPGSFTGVRTACGVVQGLAFGVDRPVVPVVTLEAAAQAC-RVHDAQAAEVLAILDA 119

Query: 121 RMGEVYWAQYR-HGADGWDVVLAPSLSSAAAVAPQGHVQACGNGLAAYAQDFAPQPFA-- 177
           RMGEVYWA+YR     GWDV+  P+LS+AA V  QG   ACGNGL+AYA+ F+P      
Sbjct: 120 RMGEVYWARYRARSGGGWDVLAEPALSAAADVNTQGRPYACGNGLSAYAEHFSPDFCGRQ 179

Query: 178 -AAALAQLMPHAAQVATLGRRMAAQGKTVSLLEAQPLYLRNKVALTTAERQVRDLAKGAA 236
            AAA A  MPHA  VATLG+    QG+ V   EAQP YLRNKVALTTAER++RD AKG A
Sbjct: 180 FAAAYASCMPHAQHVATLGQHHFDQGRGVPAQEAQPFYLRNKVALTTAERELRDAAKGVA 239


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,541
Number of extensions: 20541
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)