BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0013.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311459|ref|YP_003775551.1| thioredoxin-like protein [Herba...   201   2e-53

>gi|300311459|ref|YP_003775551.1| thioredoxin-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  201 bits (510), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 1   MSYQIFSASNRDELAAALAGDKWVVACLCAAWCGSCRDYATNFASWAERRPEHHFVWIDI 60
           MSYQI   +NR +LA AL  D WVVACLCA WCGSCR+Y   F +WAER P+HHFVWIDI
Sbjct: 1   MSYQILDQTNRRQLAEALRNDTWVVACLCANWCGSCREYDAAFRAWAERYPQHHFVWIDI 60

Query: 61  EDQADLVGDLDVDNFPTLLMQRGSTVAFFGPMEPDTRQAERLLQALSETSQQELEREAGS 120
           EDQADLVG+LD+DNFPTLLM+RG+TVAFFGPMEPDTR AERLL A  E S  EL+REA S
Sbjct: 61  EDQADLVGELDIDNFPTLLMERGATVAFFGPMEPDTRLAERLLLAQMEKSDAELQREAIS 120

Query: 121 TAQRRTWQE-CDLRKRL 136
           +A+RR+WQ+ C L  +L
Sbjct: 121 SAERRSWQQDCSLLDKL 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 462,305
Number of extensions: 17528
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)