BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0008.p
         (209 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312029|ref|YP_003776121.1| Na+-dependent transporter prote...   332   2e-92
gi|300309858|ref|YP_003773950.1| Na+-dependent transporter prote...   189   1e-49

>gi|300312029|ref|YP_003776121.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  332 bits (850), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/201 (80%), Positives = 187/201 (93%), Gaps = 1/201 (0%)

Query: 9   VPAAICAASASNLLGIFLTPLIVGVIIVAHS-AGHSSLDSILKIVYQLLLPFVAGQIARP 67
           VPAAICAASASNLLGIFLTPL+VG ++VAH  AGHSSLDSILKIVYQLLLPFVAGQIARP
Sbjct: 127 VPAAICAASASNLLGIFLTPLLVGALVVAHEGAGHSSLDSILKIVYQLLLPFVAGQIARP 186

Query: 68  WIGAWMDRNKSWLRWVDQSSVLLVVYVAFSEAVNQGLWRQVPPVMLISLIVISALLLAII 127
           WIG W++RNKSWL++VDQSS+LLVVYVAFSEAV QGLW QVP  ML++L+VI+A+LLA+I
Sbjct: 187 WIGRWIERNKSWLKFVDQSSILLVVYVAFSEAVVQGLWHQVPMSMLVALLVINAVLLALI 246

Query: 128 MAITTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFASQTVGMVLLPLMLFHQIQ 187
           MA+TT+GSRRLGF+KEDEITIVFCGSKKSLASGVPMAKVLF+S  +GMVLLP+MLFHQ+Q
Sbjct: 247 MALTTYGSRRLGFSKEDEITIVFCGSKKSLASGVPMAKVLFSSGAIGMVLLPVMLFHQLQ 306

Query: 188 LMVCAILAQRYGSRPDQAKPA 208
           LMVCA+LA RYG+R ++ + A
Sbjct: 307 LMVCAVLAARYGARQEEVEAA 327


>gi|300309858|ref|YP_003773950.1| Na+-dependent transporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  189 bits (480), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 143/196 (72%), Gaps = 1/196 (0%)

Query: 9   VPAAICAASASNLLGIFLTPLIVGVIIVAHSAGHSSLDSILKIVYQLLLPFVAGQIARPW 68
           VPAAIC A+ASNLLGI +TPL+V +++  H    + L  +L I+ QLLLPFV G + RPW
Sbjct: 93  VPAAICGATASNLLGILVTPLLVTLLLHRHHEA-NGLSQVLSILLQLLLPFVLGNLLRPW 151

Query: 69  IGAWMDRNKSWLRWVDQSSVLLVVYVAFSEAVNQGLWRQVPPVMLISLIVISALLLAIIM 128
           IG W++R+K  +  VD+  +LL VY AFS AV QG+W   PP  L  L++++A+LL  ++
Sbjct: 152 IGDWINRHKVIVNVVDRGGILLSVYAAFSAAVAQGIWHLFPPGQLALLVLVNAMLLGAVL 211

Query: 129 AITTFGSRRLGFNKEDEITIVFCGSKKSLASGVPMAKVLFASQTVGMVLLPLMLFHQIQL 188
            ITT+G+R L   + DEI +VFCGSKKSLASG+P+A VLFA     +VLLP+MLFHQ+QL
Sbjct: 212 LITTYGARALKMPRGDEIVLVFCGSKKSLASGIPIASVLFAGSGAAVVLLPIMLFHQMQL 271

Query: 189 MVCAILAQRYGSRPDQ 204
           M+CA+LA+RY ++ D 
Sbjct: 272 MLCAVLARRYAAQQDH 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 591,083
Number of extensions: 20307
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 128
Effective length of database: 1,236,335
Effective search space: 158250880
Effective search space used: 158250880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)