BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0007.p
         (463 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312031|ref|YP_003776123.1| polyferredoxin protein [Herbasp...   726   0.0  

>gi|300312031|ref|YP_003776123.1| polyferredoxin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 445

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/446 (79%), Positives = 390/446 (87%), Gaps = 1/446 (0%)

Query: 18  MRRNGALIRGIQWIVVLVYAVLILVPIFLPLPDETAHIWSNLTLIAQFCFWGIWWPFVLV 77
           MRR+GA IR +QWIVV VYA+LILVP+FLPLPDETAH+WSNLTLIAQF FWGIWWPFVLV
Sbjct: 1   MRRHGAFIRSLQWIVVAVYALLILVPVFLPLPDETAHLWSNLTLIAQFAFWGIWWPFVLV 60

Query: 78  SMVLMGRVWCGVLCPEGALTEFASKFGKGRTIPHWMRWGGWPFVAFALTTIYGQMVSVYQ 137
           SMVLMGRVWCGVLCPEGALTEFASK G+GR IP W+RWGGWPFVAFALTTIYGQMVSVYQ
Sbjct: 61  SMVLMGRVWCGVLCPEGALTEFASKHGRGRAIPRWVRWGGWPFVAFALTTIYGQMVSVYQ 120

Query: 138 YPKAVLLVLGGSTLGAMIVGYLYGREKRVWCKYLCPVNGVFGLLAKLAPFHYKVNEDAWR 197
           YPKAVLLVLGGST+GA+I+GYLYGR+KRVWCKYLCPVNGVFGLLAKLAP HYKVNEDAWR
Sbjct: 121 YPKAVLLVLGGSTVGAIIIGYLYGRDKRVWCKYLCPVNGVFGLLAKLAPLHYKVNEDAWR 180

Query: 198 ASYDTHGKKTIAVNCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTWRAPTVEIVKVGRT 257
           ASY     K I +NCAPLVPLRNMKGASDCHMCGRCSGHRDAIALT+R P VE+V+ G+T
Sbjct: 181 ASYHPE-HKIIPINCAPLVPLRNMKGASDCHMCGRCSGHRDAIALTFRPPAVEVVQFGKT 239

Query: 258 NNNLWESALALYGLFGIAIGAFHWSASPWFVEAKQFIATWLIDRDIMWPFATNAPWWLLT 317
            NNLWESAL LYGL GIAIGAFHW+ SPWF+  KQ IATWLIDRDIMWPF T APWWLLT
Sbjct: 240 ENNLWESALVLYGLLGIAIGAFHWTVSPWFIAIKQDIATWLIDRDIMWPFGTQAPWWLLT 299

Query: 318 NYPQQSDVFSWLDGGLVVSYILATAAVLGTALTALFAISNLVLGPWSRSRFNHLVQAAIP 377
           NYPQQSDVF+WLDG +VV YILAT  VLG+ +  +FA++  +LG W   RFNHLVQA IP
Sbjct: 300 NYPQQSDVFTWLDGAMVVGYILATGLVLGSGVALMFALATRLLGKWQWGRFNHLVQALIP 359

Query: 378 LAGCGVFVGLSATTISLLRAEHWPVDWANDVRAALLTVMTLWSVLLAWKVVGQHTEAFSR 437
           LAGCGVF+GLSATTISLLRAEH PV WANDVRAALL  MTLWS+ L WKVV +H   +++
Sbjct: 360 LAGCGVFIGLSATTISLLRAEHLPVYWANDVRAALLAAMTLWSLWLCWKVVARHAGHWAQ 419

Query: 438 RVLAMLPVIGALALVNYAWLLMFWIW 463
           + LAMLP++G LALVN AW LMFW W
Sbjct: 420 QCLAMLPLMGGLALVNTAWWLMFWGW 445


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.486 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,448,981
Number of extensions: 57880
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 374
Effective length of database: 1,198,455
Effective search space: 448222170
Effective search space used: 448222170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)