BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0004.p
         (262 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312034|ref|YP_003776126.1| high-affinity Fe2+ transport pe...   308   2e-85
gi|300312033|ref|YP_003776125.1| hypothetical protein Hsero_2721...    69   3e-13

>gi|300312034|ref|YP_003776126.1| high-affinity Fe2+ transport
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 181

 Score =  308 bits (790), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/177 (83%), Positives = 157/177 (88%), Gaps = 1/177 (0%)

Query: 1   MIGIKKIAVAAAM-FAAFSAASAAEYPIGKPQIQNGMEVSAVYLQPIKMEPDGMMRKAEE 59
           M+GIKK+A A A+   A   ASAAEYPIGKPQIQNG EV+AVYLQP+KMEPDGMMRKAEE
Sbjct: 1   MMGIKKLAAAVALTLCAAGMASAAEYPIGKPQIQNGFEVNAVYLQPVKMEPDGMMRKAEE 60

Query: 60  SDVHLEADIRAVAKNPNGFAEGDWMPYLVIKFELAKAGSTKVIKGDMMPMVASDGPHYGD 119
           SD+HLEADIRAVAKNPNGFAEGDWMPYL IK+EL K GSTK IKGDMMPMVA+DGPHYGD
Sbjct: 61  SDIHLEADIRAVAKNPNGFAEGDWMPYLAIKYELTKVGSTKSIKGDMMPMVANDGPHYGD 120

Query: 120 NVKLDGPGKYKLKLTISPPSANAHAHFGRHVDKETGVGAWFKPFELTYDFTFAGVPK 176
           NVKL+GPGKYKLKLTIS P AN HAHFGRHVDKETGVG WFK FEL YDFTFAG+ K
Sbjct: 121 NVKLEGPGKYKLKLTISSPQANEHAHFGRHVDKETGVGPWFKTFELNYDFTFAGIGK 177


>gi|300312033|ref|YP_003776125.1| hypothetical protein Hsero_2721
           [Herbaspirillum seropedicae SmR1]
          Length = 113

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 194 ASDLLTFKLEMADGKFNPARIEVPAGQRIKIEIHNVGKTAA 234
           AS+L TFKLEM DGK  P RIEVPAGQRIKIE+HN+GK+AA
Sbjct: 24  ASELPTFKLEMQDGKLIPPRIEVPAGQRIKIEVHNIGKSAA 64


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 796,791
Number of extensions: 33076
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 262
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 179
Effective length of database: 1,226,865
Effective search space: 219608835
Effective search space used: 219608835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)