BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0086.0001.p
         (199 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra...   115   3e-27
gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro...   110   5e-26
gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra...   105   2e-24
gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra...    96   2e-21
gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate decarbox...    84   9e-18

>gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 536

 Score =  115 bits (287), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 80/128 (62%)

Query: 3   NWKVGTRFAAGFGVVLLMMAVVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNIST 62
           N  +G R   GF ++L    ++A +G+WRL  VA+AT  MM  PL  ERL++DWY+N+  
Sbjct: 6   NMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNLVA 65

Query: 63  SITRTTAIARSTDLSLAGYFESATSDAAKNASALQAKVQRLLNTPEEQKLFADIDANRKA 122
            I RT AIA+S+D +L  YF +  + ++K++   Q +V+ LL+TPEE+ LF  I   RK 
Sbjct: 66  GIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELRKL 125

Query: 123 YHEAGDSI 130
           Y  + D I
Sbjct: 126 YLSSRDEI 133


>gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 541

 Score =  110 bits (276), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/128 (44%), Positives = 83/128 (64%)

Query: 3   NWKVGTRFAAGFGVVLLMMAVVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNIST 62
           N K+G R A GF V+L   +VV A+ IWRLQ +A AT+ MM  PL KERL+SDWY  I T
Sbjct: 6   NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65

Query: 63  SITRTTAIARSTDLSLAGYFESATSDAAKNASALQAKVQRLLNTPEEQKLFADIDANRKA 122
           S+ RTTAIA+S+D SLA +F    + A++ ++  Q  ++ L+ + +E+ +F  +   RK 
Sbjct: 66  SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125

Query: 123 YHEAGDSI 130
           Y +  D+I
Sbjct: 126 YIKYRDAI 133


>gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 515

 Score =  105 bits (263), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 81/132 (61%)

Query: 1   MKNWKVGTRFAAGFGVVLLMMAVVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNI 60
           +K+ ++G+R  AGF VVL+   VVAA+GIWRL++VA  T  MM +PL  ERL+S W + +
Sbjct: 2   IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61

Query: 61  STSITRTTAIARSTDLSLAGYFESATSDAAKNASALQAKVQRLLNTPEEQKLFADIDANR 120
             +I RTT + +S D  L  +     + ++K ++     V++LL + EE+K+FA I+  R
Sbjct: 62  LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121

Query: 121 KAYHEAGDSILA 132
           K +    D I A
Sbjct: 122 KQFLTIRDQIYA 133


>gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 533

 Score = 95.9 bits (237), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 1   MKNWKVGTRFAAGFGVVLLMMAVVAAMGIWRLQSVAEATNAMMQMPLAKERLISDWYSNI 60
           MKN K+G R A GF  +L++MAV+ A+G+WRL S+ +AT+ M ++ L KER    W++ I
Sbjct: 1   MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60

Query: 61  STSITRTTAIARSTDLSLAGYFESATSDAAKNASALQAKVQRLLNTPEEQKLFADIDANR 120
             +  RT A+ +S D +   YF+      +   S LQ +V+  +   EE++LF ++   R
Sbjct: 61  KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120

Query: 121 KAYHEAGDSIL 131
            AY     SI 
Sbjct: 121 AAYRATRQSIF 131


>gi|300312662|ref|YP_003776754.1| orotidine 5'-phosphate
           decarboxylase [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score = 83.6 bits (205), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 44/53 (83%)

Query: 140 PATASGVGAQGGDVAATVKSGKTADGGGMMINSSRAILYAKPQAGEDYAAAAR 192
           P    GVGAQGGDV ATV +GKTA G GMMINSSRAILYA PQAGED+AAAAR
Sbjct: 206 PLLVPGVGAQGGDVQATVTAGKTAAGTGMMINSSRAILYATPQAGEDFAAAAR 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.125    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 522,464
Number of extensions: 18933
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 5
Length of query: 199
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 118
Effective length of database: 1,236,335
Effective search space: 145887530
Effective search space used: 145887530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)