BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0085.0013.p (191 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 97 1e-21 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 92 3e-20 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 89 3e-19 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 87 8e-19 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 87 1e-18 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 61/175 (34%), Positives = 100/175 (57%), Gaps = 12/175 (6%) Query: 4 ELREIQRKVGTTTIMVTHDQSEALSMSDRVVVMEAGHAVQVGKPLETYENPVNAFVSQFV 63 +L ++ R +G T I VTHDQ EA+++ DR+VVME G Q+G P E Y +P N FV++F+ Sbjct: 183 DLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFI 242 Query: 64 GKANLLPGTVEWVRDGSAGVRVGNHVLEVQGTALTVGERTTLCIRPEKIEC--CTEAEEQ 121 G N + G V R +++ L + A+ G+ RPE +E TEA+ Sbjct: 243 GAMNRVDGIVAGDR-----LQLPTGTLPLPPDAVA-GQPAQALFRPEDVEVIDITEADAH 296 Query: 122 -LGGVVASSFFLGNQWLYRFETDCG-DILVILKNNGQTSCQPGQRVSLRWPTSAM 174 L G + ++FFLG++ RFE + G + VI + + + + GQ++++R P +A+ Sbjct: 297 CLRGKLINTFFLGDR--TRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATAL 349 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 91.7 bits (226), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 14/136 (10%) Query: 1 MQIELREIQRKVGTTTIMVTHDQSEALSMSDRVVVMEAGHAVQVGKPLETYENPVNAFVS 60 MQ+EL+ + +++G T + VTHDQSEAL+MSDRV V + G Q+ E YE P N FV+ Sbjct: 191 MQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPDNQFVA 250 Query: 61 QFVGKANLLPGTVEWVRDGSAGVRVGNHVLEVQGTALT--------VGERTTLCIRPEKI 112 F+G N G+VE V+ VR+ + G ALT G+ T C+RPE+I Sbjct: 251 NFIGDNNRFKGSVESVQGEHCTVRLTD------GAALTGLNVHRAHAGQSITACVRPERI 304 Query: 113 ECCTEAEEQLGGVVAS 128 + + AS Sbjct: 305 RLAAGGSAEPNSIRAS 320 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 88.6 bits (218), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 9/147 (6%) Query: 1 MQIELREIQRKVGTTTIMVTHDQSEALSMSDRVVVMEAGHAVQVGKPLETYENPVNAFVS 60 +Q+E+R +Q++ TT+MVTHDQ EA+ M+DR+ VM+ G Q G P + Y P FV+ Sbjct: 179 LQLEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVA 238 Query: 61 QFVGKANLLPGTVEWVRDGSAGVRVGNHVLEVQGTALTVGERTTLCIRPEKIECCTE--- 117 F+G+AN LP + R + V VG LE+Q C RPE ++ ++ Sbjct: 239 DFIGQANWLP----FTRLSGSQVAVGGLHLEIQPDESDRASGRLFC-RPEAVQLFSDESC 293 Query: 118 AEEQLGGVVASSFFLGNQWLYRFETDC 144 A L VV +LG+++ D Sbjct: 294 ANRFLARVV-DRIYLGDRYRLALAADA 319 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 87.4 bits (215), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 6/192 (3%) Query: 2 QIELREIQRKVGTTTIMVTHDQSEALSMSDRVVVMEAGHAVQVGKPLETYENPVNAFVSQ 61 ++E+ ++ R++ T + VTHDQ EA+++ D++VVM G Q G PLE Y+ P N FV+ Sbjct: 174 RLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAG 233 Query: 62 FVG--KANLLPGTVEWVRDGSAGVRV--GNHVL-EVQGTALTVGERTTLCIRPEKIECCT 116 F+G K N G V D V + G +L +V +T G TL +R E+I Sbjct: 234 FIGSPKMNFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGL 293 Query: 117 EAEEQLGGVVASSFFLGNQWLYRFETDCGDILVILKNNGQTSCQPGQRVSLRWPTSAMRA 176 + L GVV LG D G +V+ + +G + GQ ++L + A Sbjct: 294 GDGQPLHGVVNLVEHLGEANFLYVTLDGGHDIVV-RGDGNRNVDIGQPIALSVHSHAFHL 352 Query: 177 VESAADAASMRS 188 ++ A R+ Sbjct: 353 FDAQGQALRRRT 364 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 7/156 (4%) Query: 1 MQIELREIQRKVGTTTIMVTHDQSEALSMSDRVVVMEAGHAVQVGKPLETYENPVNAFVS 60 M++E ++ + TT I VTHDQ EA++++D++VV+ G QVG P + Y +P N FV+ Sbjct: 172 MRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVA 231 Query: 61 QFVG--KANLLPGTVEWVRDGSAGVRVGNHVLE---VQGTALTVGERTTLCIRPEKIECC 115 F+G K N + GTV ++ V++ L+ V G+ L VG++ TL +RPE + Sbjct: 232 GFIGSPKMNFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIA 291 Query: 116 TEAEEQLGGVVASSFFLGN-QWLYRFETDCGDILVI 150 + + L + LG+ +LY D L++ Sbjct: 292 -QGQAALQARCTALELLGDFSYLYAAYEGSEDALIL 326 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 548,693 Number of extensions: 20853 Number of successful extensions: 143 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 15 Length of query: 191 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 111 Effective length of database: 1,241,070 Effective search space: 137758770 Effective search space used: 137758770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)