BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0016.p
         (606 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase [Herbasp...   591   e-170

>gi|300309711|ref|YP_003773803.1| prolyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 575

 Score =  591 bits (1523), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/321 (87%), Positives = 297/321 (92%)

Query: 163 RGAASEALTKTATPGKAKCEAVAELLKLPLERTIKSIVLTVEKDKPADKEVWLLLLRGDH 222
           RGAA++AL KTATPGK+KCEAVAELL LPL RT+KSIVL V+ + PA KE+WLLLLRGDH
Sbjct: 245 RGAATQALEKTATPGKSKCEAVAELLGLPLARTVKSIVLAVDNEDPAKKEIWLLLLRGDH 304

Query: 223 ELNEVKAGKIPGLAGYRFANEAEIVEWFGTPPGYLGPIGTKKPVKVVADRTVANMNDFVC 282
           ELNEVKA KIPGL+ YRFANEAEIVEWFGTPPGYLGPIGTKKPVKVVADRTVANM DFVC
Sbjct: 305 ELNEVKASKIPGLSTYRFANEAEIVEWFGTPPGYLGPIGTKKPVKVVADRTVANMADFVC 364

Query: 283 GANEVDFHFTGANWGRDLPEPVVADIRNVVEGDASPDGKGVLAIQRGIEVGHVFQLGTAY 342
           GANE DFH+TGANWGRDLPEP+VADIRNVVEGDASPDGKGVLAIQRGIEVGHVFQLGT Y
Sbjct: 365 GANEADFHYTGANWGRDLPEPLVADIRNVVEGDASPDGKGVLAIQRGIEVGHVFQLGTTY 424

Query: 343 SESMKATYLDEAGKPQPLQMGCYGIGVTRILGAAIEQNFDDKGIIWPATLAPFEVVLCPM 402
           SE+MKATYLDEAGKPQPL MGCYGIGVTRILGAAIEQNFDD+GIIWP ++APFEVVLCPM
Sbjct: 425 SEAMKATYLDEAGKPQPLVMGCYGIGVTRILGAAIEQNFDDRGIIWPTSIAPFEVVLCPM 484

Query: 403 GYDRSEAVKAEIDKLYDALVAAGVDVILDDRGERPGAMFADWELIGVPHRIVIGDRGLKD 462
           GYDRSEAVK EIDKLY  L  AGVDV+LDDRGERPGAMFADWELIGVPHRIV+GDRGLKD
Sbjct: 485 GYDRSEAVKTEIDKLYAQLSEAGVDVVLDDRGERPGAMFADWELIGVPHRIVVGDRGLKD 544

Query: 463 GQIEYQGRRDTAATPVPLGXA 483
           G IEYQGRRDT AT VPL  A
Sbjct: 545 GNIEYQGRRDTEATQVPLAEA 565



 Score =  273 bits (699), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/144 (90%), Positives = 138/144 (95%)

Query: 24  EIVSHKLMMRAGMIKRLGSGIYTYMPMGLKVIRKVEAIVREEMNRSGAIELLMPVVQPAE 83
           EIVSHKLMMRAGMIKRLG+GIYTYMPMGL+VIRKVEAIVREEMNR+GA+ELLMPVVQPAE
Sbjct: 19  EIVSHKLMMRAGMIKRLGAGIYTYMPMGLRVIRKVEAIVREEMNRAGAVELLMPVVQPAE 78

Query: 84  LWQETGRWDKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARTELRSYKQLPVNFYHIQTK 143
           LWQETGRW+KMGAELMRVKDRHGRDFAIQPTSEEVVTDVAR+ELRSYKQLPVNFYHIQTK
Sbjct: 79  LWQETGRWNKMGAELMRVKDRHGRDFAIQPTSEEVVTDVARSELRSYKQLPVNFYHIQTK 138

Query: 144 FRDERRPRFGLMRGRRGGRRGAAS 167
           FRDERRPRFGLMRGR    + A S
Sbjct: 139 FRDERRPRFGLMRGREFTMKDAYS 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,983,203
Number of extensions: 90179
Number of successful extensions: 231
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 2
Length of query: 606
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,188,985
Effective search space: 612327275
Effective search space used: 612327275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)