BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0011.p
         (292 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedi...   381   e-107
gi|300313366|ref|YP_003777458.1| GTP-binding protein [Herbaspiri...    61   1e-10

>gi|300309707|ref|YP_003773799.1| GTPase [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score =  381 bits (978), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/238 (81%), Positives = 207/238 (86%), Gaps = 9/238 (3%)

Query: 57  RRRQEGDRGHREDL--DDLVLVDVDETDDLHLGRVQRXAGKSTFISAVSNARPKIADYPF 114
           R++ EG  G R +L  +  VL DV       LG     AGKSTFI+AVSNARPKIADYPF
Sbjct: 139 RQKTEGKEGERRELRLELKVLADVG-----LLG--MPNAGKSTFITAVSNARPKIADYPF 191

Query: 115 TTLHPNLGVVRVSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFE 174
           TTLHPNLGVVRVSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPF 
Sbjct: 192 TTLHPNLGVVRVSHEKSFVIADIPGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFN 251

Query: 175 DTVDPVKEAKAIVKELQKYDDSLFDKPRWLVLNKLDVVPEADRKKRVKDFVKRFGWKGPV 234
           + VDPVKEAKAIV+EL+KYD SLFDKPRWLVLNKLDVVPEA+R KRVKDFVKRFGWKGPV
Sbjct: 252 EEVDPVKEAKAIVQELKKYDQSLFDKPRWLVLNKLDVVPEAERAKRVKDFVKRFGWKGPV 311

Query: 235 FEISALTRDGCEDLITEIYGYLETKRHQEHRSEETQMTEEARGISSIDPDDPRFKVID 292
           FEISAL RDGCE+LI EIY YLETKR +EHRSEETQMTEEAR ISSIDPDDPRFKV+D
Sbjct: 312 FEISALNRDGCEELINEIYKYLETKRAEEHRSEETQMTEEARAISSIDPDDPRFKVLD 369


>gi|300313366|ref|YP_003777458.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 26/131 (19%)

Query: 94  GKSTFISAVSNARPKIADYPFTTLHPNLGVVRVSHEKSFVIA----------------DI 137
           GKST  +A++ A     +YPF T+ PN+G+V V   +   +A                DI
Sbjct: 14  GKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKPERILPATVEFVDI 73

Query: 138 PGLIEGAADGAGLGVQFLRHLQRTGLLLHIVDLAPFEDT--------VDPVKEAKAIVKE 189
            GL+ GA+ G GLG QFL H++ T  ++++V    FED         V P+ +   I  E
Sbjct: 74  AGLVAGASKGEGLGNQFLSHIRETDAIVNVVRC--FEDPNVIHVAGRVSPLDDIAVIQTE 131

Query: 190 LQKYDDSLFDK 200
           L   D    +K
Sbjct: 132 LALADMGTVEK 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 736,732
Number of extensions: 25816
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 208
Effective length of database: 1,222,130
Effective search space: 254203040
Effective search space used: 254203040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)