BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0010.p
         (102 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC t...    72   1e-14
gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC t...    58   2e-10
gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC t...    54   2e-09

>gi|300310948|ref|YP_003775040.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 394

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 3   GHPVEKVQNFKRLEQAYREKYTSPLIPRTWFAYDAVDMLAEAMKRAGSTNPRLLSPILHQ 62
           G P +K+  +K   Q Y E + S +     FAY+A   + + +++AGS +P  ++  +H+
Sbjct: 290 GPPQDKMPGWKSFRQRYSENFDSDMDLYAVFAYEAAQAIIQGIRQAGSADPERIAEAMHR 349

Query: 63  MKFNGLSGAISFAPDGSLIAPPYTLYRAEQGRWK---TLNTLP 102
           ++F G+SG ++F  +G L+ P +T+Y  +  RW+     N LP
Sbjct: 350 LRFEGVSGPVAFNEEGDLLQPSFTMYEVKDQRWQPVARFNGLP 392


>gi|300313247|ref|YP_003777339.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)

Query: 11  NFKRLEQAYREKYTSPLIPRTWFAYDAVDMLAEAMKRAGSTNPRLLSPILHQMKFNGLSG 70
            +K + Q Y+ ++ +     +++AYDA  +L  A+ +AGS N   ++  LH+M+  GL G
Sbjct: 283 QWKVVTQTYQRRFGAAPTTYSFYAYDAASVLTAAIVQAGSDNGDKIATALHRMRHAGLHG 342

Query: 71  AISFAPDGSLIAPPYTLYRAEQGRWKTLNTL 101
            +SF   G+   P YTL R ++ RW+ +   
Sbjct: 343 TLSFDATGANAHPRYTLLRYQE-RWQAVEVF 372


>gi|300309516|ref|YP_003773608.1| branched-chain amino acid ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 378

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 47/91 (51%)

Query: 3   GHPVEKVQNFKRLEQAYREKYTSPLIPRTWFAYDAVDMLAEAMKRAGSTNPRLLSPILHQ 62
           G  ++K +  K     Y++KY  P        YD + ++A+AMK+A S +P+   P L +
Sbjct: 280 GTMLDKAKEGKVFSDEYQKKYNRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAK 339

Query: 63  MKFNGLSGAISFAPDGSLIAPPYTLYRAEQG 93
           + + G++G   F  +  L   P T+YR + G
Sbjct: 340 ISYKGVAGQYDFDANHDLKQSPVTVYRFKDG 370


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 350,182
Number of extensions: 12960
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 3
Length of query: 102
Length of database: 1,619,870
Length adjustment: 71
Effective length of query: 31
Effective length of database: 1,283,685
Effective search space: 39794235
Effective search space used: 39794235
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)