BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0084.0006.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...   327   4e-91
gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...    67   2e-12

>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  327 bits (838), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 160/181 (88%), Positives = 172/181 (95%)

Query: 1   MGEVNTVIRRQLYSEVPLVNQVSEYIISAGGKRIRPVLVLLIANAYAYKGTAHHSLAAVI 60
           M  VN VIRRQLYSEVPLVNQV+EYIISAGGKR+RPVLV+LIANA+ YKG  HHSLAAVI
Sbjct: 1   MEAVNAVIRRQLYSEVPLVNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVI 60

Query: 61  EFIHTATLLHDDVVDESSLRRGKETANALFGNAASVLVGDFLYSRAFQMMVAVGNARVMQ 120
           EFIHTATLLHDDVVDESSLRRGK+TANA+FGNAASVLVGDFLYSRAFQMMVAVGN RVM+
Sbjct: 61  EFIHTATLLHDDVVDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMMVAVGNPRVME 120

Query: 121 IVADATNVIAEGEVLQLLNMHNPDVNEEDYLRVIRSKTAKLFEAAAQLGALISGADEAGI 180
           IVADATNVIAEGEVLQLLNMHNPDV+E  YL+VIRSKTAKLFEAA+Q+GALI+GADEAGI
Sbjct: 121 IVADATNVIAEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGALIAGADEAGI 180

Query: 181 E 181
           E
Sbjct: 181 E 181


>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 26/196 (13%)

Query: 1   MGEVNT----VIRRQLYSE--VPL-VNQVSEYIISAGGKRIRPVLVLLIANAYAYKGTAH 53
           MG+V +    V+ R L S   VP  +++   Y    GGKR+RP+LV      +       
Sbjct: 16  MGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTPRALL 75

Query: 54  HSLAAVIEFIHTATLLHDD--VVDESSLRRGKETANALFGNAASVLVGDFLYSRAFQMMV 111
              AA +E IH  +L+HDD   +D+ +LRRGK T +  +  A ++LVGD L ++AF  + 
Sbjct: 76  ERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAFDTLA 135

Query: 112 A-----VGNA---------RVMQIVADATNVI--AEGEVLQLLNMHNPDVNEEDYLRVIR 155
           A      G+A         R+++++A+A   +    G+ + L ++    ++  +  ++ R
Sbjct: 136 APLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASV-GMTLSLAELEQMHR 194

Query: 156 SKTAKLFEAAAQLGAL 171
            KT  L  AA  LGAL
Sbjct: 195 LKTGALLRAAVLLGAL 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 558,986
Number of extensions: 20018
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)