BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0065.p (281 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 154 6e-39 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 151 6e-38 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 150 1e-37 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 149 2e-37 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 149 3e-37 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 154 bits (390), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 131/215 (60%), Gaps = 8/215 (3%) Query: 26 HITIRGLTKYFAG----WPLYEDFDLDIPKGKIVSVFGPNGCGKSTLINMIAGLIPIDSG 81 I I+G+ K F +D +LDIP G+ V + GP+GCGKSTL+N IAG SG Sbjct: 9 RIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 82 QILFDGKSLADT--KIGYVFQNYREAMFPWLRTIDNIAYPLKLEGKSKAEINRRVEELVA 139 QIL D K +++ G VFQ Y A+FPW+ N+A+ L+++G KAEI++RV +L+ Sbjct: 69 QILTDDKVVSEPGPDRGMVFQEY--ALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLD 126 Query: 140 SFDVKFDLNRYPYEMSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQEV 199 + R+P ++SGG +Q +I R LA ++ +DEPF ALD ++++L + Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 200 FMQTGTTMMLVSHDLEEAVYLADEILLLTKRPTKV 234 + + T++ V+H +EEA+YLAD I+++T RP V Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTV 221 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 151 bits (381), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 79/205 (38%), Positives = 123/205 (60%), Gaps = 12/205 (5%) Query: 46 DLDIPKGKIVSVFGPNGCGKSTLINMIAGLIPIDSGQILFDGKSLAD--TKIGYVFQNYR 103 LDIP G V G +GCGKSTL+N +AG +P+ G+I DG+ ++ + G VFQ + Sbjct: 26 SLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGVVFQ--K 83 Query: 104 EAMFPWLRTIDNIAYPLKLEGKSKAEINRRVEELVASFDVKFDLNRYPYEMSGGQQQTAS 163 +++ PW DN+A LK G SK++ R +EL+ ++ PYE+SGG +Q Sbjct: 84 DSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGMRQRVG 143 Query: 164 IMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQE----VFMQTGTTMMLVSHDLEEAVY 219 + RALAP P++L +DEPF ALD MT RE++QE V+ +TG + ++H +EEA++ Sbjct: 144 LARALAPNPKILLMDEPFGALD-SMT---REQMQELLVSVWARTGKQVFFITHSIEEALF 199 Query: 220 LADEILLLTKRPTKVAHILHYDDAR 244 L E+++++ RP ++ D R Sbjct: 200 LGTEVIVMSPRPGRIVARFETDFVR 224 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 132/212 (62%), Gaps = 11/212 (5%) Query: 27 ITIRGLTKYFAGWPLYEDFDLDIPKGKIVSVFGPNGCGKSTLINMIAGLIPIDSGQILFD 86 I + + K F + D L+ P G++ ++ GP+GCGK+TL+ +IAGL DSGQ+L D Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 87 G-----KSLADTKIGYVFQNYREAMFPWLRTIDNIAYPLKLEGKSK----AEINRRVEEL 137 G + + + ++G+VFQ+Y A+F + +NIA+ L+++ +S+ A I +V+ L Sbjct: 63 GEDASARHVRERQVGFVFQHY--ALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 138 VASFDVKFDLNRYPYEMSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQ 197 + + + +RYP ++SGGQ+Q ++ RALA P VL LDEPF ALD ++ +R L+ Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 198 EVFMQTGTTMMLVSHDLEEAVYLADEILLLTK 229 + + T + V+HD EEA+ +AD+++L+ K Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNK 212 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 80/254 (31%), Positives = 142/254 (55%), Gaps = 11/254 (4%) Query: 11 HEEPEVPFRPGPPGTHITIRGLTKYFAGWPLYEDFDLDIPKGKIVSVFGPNGCGKSTLIN 70 E P + R +++ R +T DF + + +G+ V+V GP GCGKST ++ Sbjct: 17 QETPAIELR------NVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLS 70 Query: 71 MIAGLIPIDSGQILFDGKSLA--DTKIGYVFQNYREAMFPWLRTIDNIAYPLKLEGKSKA 128 +I GL+ G++ G+ + D +IG+VFQN +A+FPW +N+A G+ KA Sbjct: 71 LITGLLKPTLGEVRVMGQPVNGIDPRIGFVFQN--DAVFPWRSVRENVAAGPLFRGQPKA 128 Query: 129 EINRRVEELVASFDVKFDLNRYPYEMSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEM 188 + + +E + + + YP+++SGG ++ ++ + PE+L +DEPFSALD + Sbjct: 129 QAHALADEWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQT 188 Query: 189 TLFIREKLQEVFMQTGTTMMLVSHDLEEAVYLADEILLLTKRPTKVAHILHYDDARPRTV 248 ++++L ++ +++ V+HDLEEA+ LAD++ +LT RP + + D RPR + Sbjct: 189 RTLMQDELLRLWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVM 248 Query: 249 ETL-MQPRFIDAKK 261 E + + RFID + Sbjct: 249 EEVRYEQRFIDISR 262 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 149 bits (375), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 127/216 (58%), Gaps = 6/216 (2%) Query: 24 GTHITIRGLTKYFAGWPLYEDFDLDIPKGKIVSVFGPNGCGKSTLINMIAGLIPIDSGQI 83 G+ ++++ + + DLDI G+ V + GP+GCGKSTL+N IAG + SG+I Sbjct: 4 GSSVSLKRVGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDV-SGEI 62 Query: 84 LFDGKSLADTKI--GYVFQNYREAMFPWLRTIDNIAYPLKLEGKSKAEINRRVEELVASF 141 DGK + + G VFQ+ EA+FPWL +N+ Y LKL G + AE E V+ Sbjct: 63 SVDGKRVKGPGLDRGVVFQSS-EALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLV 121 Query: 142 DVKFDLNRYPYEMSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQEVFM 201 +K ++++P E+SGG +Q A I R L P V+ +DEPF ALD + ++ +L ++ Sbjct: 122 GLKHAIDKFPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWK 181 Query: 202 QTGTTMMLVSHDLEEAVYLADEILLLTKRPTKVAHI 237 TG T++ V+HD+ EA+ LAD ++ +T P AHI Sbjct: 182 STGCTIVFVTHDIWEAILLADRVVTMTAGPR--AHI 215 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 876,950 Number of extensions: 35974 Number of successful extensions: 470 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 142 Length of query: 281 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 197 Effective length of database: 1,222,130 Effective search space: 240759610 Effective search space used: 240759610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)