BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0063.p
         (366 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313550|ref|YP_003777642.1| ABC transporter permease [Herba...    96   5e-21

>gi|300313550|ref|YP_003777642.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 364

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 133/308 (43%), Gaps = 52/308 (16%)

Query: 93  FGSMFAWQNTLQRAAPLLLTALCVALPARVGLIVIGGEGALAMGGLFAAVFPSFLP---- 148
           F    A    L ++ PL+L AL +A+  R  +  IG EG   +G L +     +L     
Sbjct: 60  FNGKRAISELLLKSVPLILCALGLAVCFRASIWNIGAEGQFTVGALCSGAMLVWLDVPGH 119

Query: 149 ALSPWIMLPAMAIVAMIAGGLWIALCGALRQWRGVNETISSLLLSYIAVALFKHLVEGPL 208
            +S  + L  M +  +I G LW A+   LR     NE + SL+L+Y+A  L    V GPL
Sbjct: 120 GVSGGMGLVLMIVAGVIGGALWAAITAFLRDQFNANEILVSLMLTYVAQLLLMWAVNGPL 179

Query: 209 RDPASLNKPSTLPLPEAYLINPL-PGLDVHWGLVWGALACVAAWIFLRHSVIGFAMX--- 264
           +DP  +N P +      +++  L  G  +H G     +A V   IF+  S+ GF++    
Sbjct: 180 KDPNGMNFPQSKVFSSEFMLPTLISGTRLHIGFAVAIVAAVLMAIFMMRSLRGFSLMVGG 239

Query: 265 ----------HSANSALLA------------------------------GYGFSGILVAF 284
                      SA SAL                                GYGF+ I+VAF
Sbjct: 240 VAPHAARYAGFSARSALWVSLLISGAFAGLAGAFEIAGPIGQLLPSVSPGYGFAAIIVAF 299

Query: 285 AARQNPLAIIVCAVVIGGVEASGSLLQRRLDLPDATTLVLQGLLFCNLLAWEAVTGRLGA 344
             R +P+  I+  +++  +   G L Q RL LP A T V QG+L   LLA + +      
Sbjct: 300 IGRLHPIGAILGGLIMSLLYLGGELAQSRLGLPSAITGVFQGMLLFLLLACDTLIDY--- 356

Query: 345 LKMRWQQQ 352
            ++ W ++
Sbjct: 357 -RLAWNKK 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,140,600
Number of extensions: 47994
Number of successful extensions: 275
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 280
Effective length of database: 1,212,660
Effective search space: 339544800
Effective search space used: 339544800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)