BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0061.p
         (195 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily prot...   353   4e-99
gi|300310740|ref|YP_003774832.1| isochorismatase family protein ...   152   1e-38
gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein [He...    54   1e-08

>gi|300310742|ref|YP_003774834.1| cysteine hydrolase falmily protein
           [Herbaspirillum seropedicae SmR1]
          Length = 231

 Score =  353 bits (907), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 172/230 (74%), Positives = 186/230 (80%), Gaps = 36/230 (15%)

Query: 1   MSELFIQSEPYPWPYDGALKPGNTALVVIDMQTDFCGIGGYVDKMGYDLSLTRAPIAPIR 60
           MS  FIQ+EPYPWPYDGAL P NTAL+VIDMQTDFCGIGGYVDKMGYDLSLTRAPI PIR
Sbjct: 1   MSARFIQAEPYPWPYDGALTPANTALIVIDMQTDFCGIGGYVDKMGYDLSLTRAPIEPIR 60

Query: 61  NVLSAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRR----------------------- 97
            VL+AMRAGGYTIIHTREGHRPDLSDLPANKRWRSR+                       
Sbjct: 61  KVLAAMRAGGYTIIHTREGHRPDLSDLPANKRWRSRQIGANGVGIGDAGPCGRILVRGEP 120

Query: 98  -------------EIIIDKPGKGSFCATDLELVLHTRGIRNLILTGITTDVCVHTTMREA 144
                        EIIIDKPGKGSFCATDLE++LHTRGIRN++LTGITTDVCVHTTMREA
Sbjct: 121 GWEIIPELAPIAGEIIIDKPGKGSFCATDLEMILHTRGIRNIVLTGITTDVCVHTTMREA 180

Query: 145 NDRGFECVMLADCCGATDHNNHLAALSMIKMQGGVFGAVSDSSSLLQAIG 194
           NDRGFECVML+DCCGATD+NNHLAALSMIKMQGGVFGAV+DS++L+  IG
Sbjct: 181 NDRGFECVMLSDCCGATDYNNHLAALSMIKMQGGVFGAVADSAALIAVIG 230


>gi|300310740|ref|YP_003774832.1| isochorismatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 227

 Score =  152 bits (385), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 117/221 (52%), Gaps = 34/221 (15%)

Query: 5   FIQSEPYPWPYDGALKPGNTALVVIDMQTDFCGIGGYVDKMGYDLSLTRAPIAPIRNVLS 64
            I+ + +P+PY     P +TALVVIDMQ DF   GG+   +G D+    A +  +  +L+
Sbjct: 1   MIRIDAFPYPYQ--FHPRSTALVVIDMQRDFVEEGGFGSALGNDVRPLGAIVPTVAALLA 58

Query: 65  AMRAGGYTIIHTREGHRPDLSDLPANKRWRSRR--------------------------- 97
             R     ++HTRE H PDLSD P  KR R                              
Sbjct: 59  LARQTQMLVVHTRESHLPDLSDCPRTKRLRGNPTLGIGDVGPMGRILVRGEPGNQILPQL 118

Query: 98  -----EIIIDKPGKGSFCATDLELVLHTRGIRNLILTGITTDVCVHTTMREANDRGFECV 152
                EI+IDKPGKG+F ATDL   L  RGI +L++ G+TT+VCV T+MREANDRG+EC+
Sbjct: 119 TPMAGEIVIDKPGKGAFYATDLHAQLQERGITHLLVAGVTTEVCVQTSMREANDRGYECL 178

Query: 153 MLADCCGATDHNNHLAALSMIKMQGGVFGAVSDSSSLLQAI 193
           ++ D C +     H A L M+  QGG+ G  +  + L  A+
Sbjct: 179 VVEDACASYFPAFHRATLDMLTAQGGIVGWRAPLAQLQSAV 219


>gi|300310060|ref|YP_003774152.1| nicotinamidase-like protein
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 53.5 bits (127), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 13/134 (9%)

Query: 23  NTALVVIDMQTDF-------CGIGGYVDKMGYDLSLTRAPIAPIRNVLSAMRAGGYTIIH 75
             ALV+ID QT++        GIG  V ++   L   RA  AP+ +V+   + GG     
Sbjct: 22  EAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMF-- 79

Query: 76  TREGHRPDLSDLPANKRWRSRREIIIDKPGKGSFCATDLELVLHTRGIRNLILTGITTDV 135
             +   P ++ +  +       E +I K    SF  T L+  L   G ++LI+ G  T +
Sbjct: 80  --DPQGPHVAII--DGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHM 135

Query: 136 CVHTTMREANDRGF 149
           CV  T+R A D G+
Sbjct: 136 CVSATVRSALDHGY 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 620,448
Number of extensions: 24443
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 4
Length of query: 195
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 115
Effective length of database: 1,241,070
Effective search space: 142723050
Effective search space used: 142723050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)