BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0060.p (370 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp... 334 9e-93 gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbasp... 125 4e-30 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 124 1e-29 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 112 6e-26 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 106 4e-24 >gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 334 bits (856), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 166/199 (83%), Positives = 178/199 (89%) Query: 1 MHALELEVIGAGKSFGEFRALDEVSIRIKAGTIHALLGENGAGKSTLVKGLVGYSPLNQG 60 MHALELE+I AGKSFG FRALDEVS++I+AGTIHALLGENGAGKSTLVKGLVGYSPL+QG Sbjct: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 Query: 61 IIQADRREVDIRGPRVPNTLGIGMVYQHFTLAPSLSVAENLLLARGLVRWRIHWNLERQV 120 I ADRREVDIR RVPN LGIGMVYQHFTLAPSL+VAENLLLARG + WRI W+ ER V Sbjct: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWSSERAV 120 Query: 121 LEEFMEAMPFRLDLDRLVSSLSAGEKQKLEILKQLYLRRRLLILDEPTSVLTPQEADEVL 180 LEEFM MPF+L +R VSSLSAGEKQKLEILKQLYLRRR LILDEPTSVLTPQEADEVL Sbjct: 121 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 Query: 181 GLMRDLTRREELTVLMITQ 199 GLM LTR++ELTVLMIT Sbjct: 181 GLMHALTRQQELTVLMITH 199 >gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 125 bits (315), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 14/224 (6%) Query: 4 LELEVIGAGKSFGEFRALDEVSIRIKAGTIHALLGENGAGKSTLVKGLVGYSPLNQGIIQ 63 L LE+ K++ A D+VS+ + G IHA+LGENGAGKSTL+K + G + G I+ Sbjct: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 Query: 64 ADRREVDIRGPRVPNTLGIGMVYQHFTLAPSLSVAENLLLARGLVRWRIHWNLERQVLEE 123 + V I P+V LGI MV+QHF+L +L+V EN+ L + + + L E Sbjct: 66 WNGEAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALG-------LDAKTDLKELAE 118 Query: 124 FM----EAMPFRLDLDRLVSSLSAGEKQKLEILKQLYLRRRLLILDEPTSVLTPQEADEV 179 + E L+ R V +LS GE+Q++EI++ L +LLILDEPTSVLTPQ +++ Sbjct: 119 RITRTGEKYGLELEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVEKL 178 Query: 180 LGLMRDLTRREELTVLMITQIPRSHRLRRRCHGAAQGAAGRQRG 223 +R L E ++L I+ + +R CH A GR G Sbjct: 179 FVTLRRLA-DEGCSILYISH--KLDEIRALCHSATVMRGGRVTG 219 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 115/203 (56%), Gaps = 7/203 (3%) Query: 1 MHALELEVIGAGKSFGEFRALDEVSIRIKAGTIHALLGENGAGKSTLVKGLVGYSPLNQG 60 M A L++ G K+FG L V + ++AG +HALLGENGAGKSTL+K L G + G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 IIQADRREVDIRGPRVPNTLGIGMVYQHFTLAPSLSVAENLLLARGLVRWRIHWNLERQV 120 I+ D + R G+G+V+Q F+L P L +N+ LAR L R R W L+R Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLAREL-RSRWGW-LQRAA 118 Query: 121 L----EEFMEAMPFRLDLDRLVSSLSAGEKQKLEILKQLYLRRRLLILDEPTSVLTPQEA 176 + +E + + + LD V LS ++Q +EI K L L R+L+LDEPT+ LTP E Sbjct: 119 MRRRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEV 178 Query: 177 DEVLGLMRDLTRREELTVLMITQ 199 + + +MR L R + + ++ I+ Sbjct: 179 EHLFAVMRSL-RAQGVAIIFISH 200 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 112 bits (279), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 114/204 (55%), Gaps = 10/204 (4%) Query: 6 LEVIGAGKSFGEFRALDEVSIRIKAGTIHALLGENGAGKSTLVKGLVGYSPLNQGIIQAD 65 L++ G KSFG AL ++ + I+ G IHAL+GENGAGKSTL+K L G +QG I D Sbjct: 7 LQMRGIRKSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLD 66 Query: 66 RREVDIRGPRVPNTLGIGMVYQHFTLAPSLSVAENLLLARGLVRWR---IHWNLERQVLE 122 R V +R P GI ++YQ +AP++SVA N+ + L R R I R + Sbjct: 67 GRPVALRDPGASRAAGINLIYQELAVAPNISVAANVFMGSEL-RTRLGLIDHAAMRSRTD 125 Query: 123 EFMEAMPFRLDLDRLVSSLSAGEKQKLEILKQLYLRRRLLILDEPTSVLTPQEADEVLGL 182 + + L LS E+Q++EI + L R R++I+DEPT+ L+ +E +++ + Sbjct: 126 AVLRQLGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNV 185 Query: 183 MRDLTRREELTVLMITQIPRSHRL 206 +R L R E L ++ I SHR+ Sbjct: 186 VRRL-RDEGLAIIYI-----SHRM 203 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 68/196 (34%), Positives = 106/196 (54%), Gaps = 2/196 (1%) Query: 6 LEVIGAGKSFGEFRALDEVSIRIKAGTIHALLGENGAGKSTLVKGLVGYSPLNQGIIQAD 65 LE+ G K+F +AL +V +R+ G +H L+G+NGAGKSTL+K L G + G I+ D Sbjct: 13 LELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIELD 72 Query: 66 RREVDIRGPRVPNTLGIGMVYQHFTLAPSLSVAENLLLARGLVRW-RIHWNLERQVLEEF 124 R + LGI VYQ L P+LSVAEN+ + R R+ RI W + Sbjct: 73 GRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPTRFGRIDWKSVHTQSRQL 132 Query: 125 MEAMPFRLDLDRLVSSLSAGEKQKLEILKQLYLRRRLLILDEPTSVLTPQEADEVLGLMR 184 ++ + +D+ +SS +Q + I + L + ++LILDEPTS L E ++ ++R Sbjct: 133 LQQLQIDIDVAAPLSSYPLAIQQMVAISRALSVSAKVLILDEPTSSLDEAEVQQLFKVLR 192 Query: 185 DLTRREELTVLMITQI 200 L R + + +L +T Sbjct: 193 RL-REQGMAILFVTHF 207 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,043,292 Number of extensions: 43210 Number of successful extensions: 488 Number of sequences better than 1.0e-08: 106 Number of HSP's gapped: 379 Number of HSP's successfully gapped: 114 Length of query: 370 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 283 Effective length of database: 1,207,925 Effective search space: 341842775 Effective search space used: 341842775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)