BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0058.p
         (133 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp...   150   5e-38
gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H...    54   3e-09

>gi|300310741|ref|YP_003774833.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 522

 Score =  150 bits (378), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 79/91 (86%)

Query: 1   VLTPQEADEVLGLMRDLTRREELTVLMITHKFHEVTAYADDVTVLRKGRLVGSAAVADTS 60
           VLTPQEADEVLGLM  LTR++ELTVLMITHKFHEV+AYADDVTVLRKGRLVGSA VA+TS
Sbjct: 170 VLTPQEADEVLGLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETS 229

Query: 61  PAELAHWMMGQARVEKEAVARPPVPADAPVG 91
           P  LAHWMMGQAR EK  VARP VP  A VG
Sbjct: 230 PDMLAHWMMGQARAEKAQVARPAVPVQASVG 260


>gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 506

 Score = 54.3 bits (129), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 2   LTPQEADEVLGLMRDLTRREELTVLMITHKFHEVTAYADDVTVLRKGRLVGSAAVADTSP 61
           LTP E + +  +MR L R + + ++ I+H   E+    D +TVLR G  V + A A+   
Sbjct: 173 LTPAEVEHLFAVMRSL-RAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQ 231

Query: 62  AELAHWMMGQARVEKEAVARPPVPADAPVGXG 93
           A L   M+G+ R+E      PP PA    G G
Sbjct: 232 ARLVEMMVGR-RIEN---CFPPKPAKGGEGEG 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 275,338
Number of extensions: 7745
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 133
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 58
Effective length of database: 1,264,745
Effective search space: 73355210
Effective search space used: 73355210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)