BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0054.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310738|ref|YP_003774830.1| transcription regulator protein... 384 e-108 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 74 8e-15 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 72 3e-14 gi|300314040|ref|YP_003778132.1| transcription regulator protein... 59 3e-10 gi|300310477|ref|YP_003774569.1| GntR family transcription regul... 56 3e-09 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 384 bits (986), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/225 (82%), Positives = 205/225 (91%) Query: 1 MTVTAANPLAEQVYNRLKEDIFNFRLLPGDNFTETEMALSYGVSRTPLRDALFRMQREGY 60 MTVT AN LAEQVY+RLK+DIF+FRLLPGDNFTETEMA GVSRTPLRDALFR+QREGY Sbjct: 1 MTVTLANALAEQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGY 60 Query: 61 LDVGFRRGWKVRPIDFDRLDNLYDLRIVLEMAALERLCQNPDPAPGLLALNAVWLVPEEE 120 L+VGFRRGWKV PIDFDRLDNLYDLRIVLEMAAL++LC P+ + L LNA+WL + Sbjct: 61 LEVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQPEASAELTQLNAIWLAEPDA 120 Query: 121 RESEAVKVAELDESFHTNLVAAAGNEEMTRIHTEVTEKIRIVRRLDFLKKNRVLATYEEH 180 R+++AVKVA+LDE+FHTNLVAAAGNEEMTR+HTEVTEKIRIVRRLDFLKK R+ ATYEEH Sbjct: 121 RQTDAVKVAQLDEAFHTNLVAAAGNEEMTRVHTEVTEKIRIVRRLDFLKKKRIDATYEEH 180 Query: 181 GKILKLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQEQ 225 GKIL+LIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQ Q Sbjct: 181 GKILQLIAKRKATEAQILLRAHITQSKLEVRKITIWMLAEARQLQ 225 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 74.3 bits (181), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 98/206 (47%), Gaps = 11/206 (5%) Query: 9 LAEQVYNRLKEDIFNFRLLPGDNFTETEMALSYGVSRTPLRDALFRMQREGYLDVGFRRG 68 L+E V+ +++ I + PG +E E+A +YG+SR PLR+A+ R++ + L G Sbjct: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 Query: 69 WKVRPIDFDRLDNLYDLRIVLEMAALERLCQNPDPAPGLLALNAVWLVPEEERESEAVKV 128 +V + + L L+ +R LE A Q A L+ + V + + EA + Sbjct: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAE----LDELRRVLDTHEKDEAFQA 132 Query: 129 A------ELDESFHTNLVAAAGNEEMTRI-HTEVTEKIRIVRRLDFLKKNRVLATYEEHG 181 E D FH ++ A+GN+ +TRI E+ + R+ R +R + EH Sbjct: 133 GRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHH 192 Query: 182 KILKLIAKRKATEAQILLRAHITQSK 207 +IL +A A +L+R HI S+ Sbjct: 193 RILDALADGDGELADLLMRRHIGASR 218 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 72.4 bits (176), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 14/201 (6%) Query: 10 AEQVYNRLKEDIFNFRLLPGDNFTETEMALSYGVSRTPLRDALFRMQREGYLDVGFRRGW 69 AE + ++E I +L PG + ET +A +GVSRTP+R+AL ++ G +++ RRG Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 70 KVRPIDFDRLDNLYDLRIVLEMAALERLC-------QNPDPAPGLLALNAVWLVPEEERE 122 V I +L ++++ MA E +C P LLA + + + Sbjct: 68 IVAEIGPQQLIEMFEV-----MAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAND 122 Query: 123 SEAVKVAELDESFHTNLVAAAGNEEMTRIHTEVTEKIRIVRRLDFLKKNRVLATYEEHGK 182 +A L+E+FH ++ A + N + + ++R RRL ++R+ ++++EH Sbjct: 123 PDAYFY--LNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQA 180 Query: 183 ILKLIAKRKATEAQILLRAHI 203 ++ I A + LLR HI Sbjct: 181 VVDAIISGDAEKTVDLLREHI 201 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 59.3 bits (142), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 15/222 (6%) Query: 3 VTAANPLAEQVYNRLKEDIFNFRLLPGDNFTETEMALSYGVSRTPLRDALFRMQREGYLD 62 + A L EQVY+ + + I L P + T+ +A GVSR P+ A ++REG+++ Sbjct: 4 IDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIE 63 Query: 63 VGFRRGWKVRPIDFDRLDNLYDLRIVLEMAALERLCQNPDPAPGL--------LALNAVW 114 R+G V +D RL LY +R VL+ A + L AL Sbjct: 64 DAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALIEAG 123 Query: 115 LVPEEERESEAVKVAELDESFHTNLVAAAGNEEMTRIHTEVTEKIRIVRRLDFLKKNRV- 173 + R+ A +A++D FH + + GN + + + IR R + + + V Sbjct: 124 RALADMRDLSARILADMD--FHQFIYRSCGNPMIGQTTALHWQHIR--RAMGAILSSEVR 179 Query: 174 --LATYEEHGKILKLIAKRKATEAQILLRAHITQSKLEVRKI 213 LA +EEH IL+ + + + A L R H + + ++ Sbjct: 180 SHLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARV 221 >gi|300310477|ref|YP_003774569.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 55.8 bits (133), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 47/95 (49%) Query: 10 AEQVYNRLKEDIFNFRLLPGDNFTETEMALSYGVSRTPLRDALFRMQREGYLDVGFRRGW 69 A QV+ L+E I RL P E+A YG+S+TP+RDAL ++ EG +D+ + Sbjct: 23 APQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIRDALIKLGEEGLVDIFPQHAT 82 Query: 70 KVRPIDFDRLDNLYDLRIVLEMAALERLCQNPDPA 104 V ++ + LR +E+ + L D A Sbjct: 83 VVSAVNVTLARQAHFLRRSIELEIVHTLAAQADAA 117 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 659,636 Number of extensions: 25000 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 7 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)