BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0052.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310737|ref|YP_003774829.1| riboflavin biosynthesis protein...   491   e-140

>gi|300310737|ref|YP_003774829.1| riboflavin biosynthesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score =  491 bits (1264), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/325 (74%), Positives = 270/325 (83%), Gaps = 20/325 (6%)

Query: 1   MKVFRGLPNAESRAPCALTIGNFDGVHRGHQALLA----------------XFDGVHRGH 44
           MKVFRGLP AESRAPCALTIGNFDGVH GHQALLA                 F+   R  
Sbjct: 1   MKVFRGLPTAESRAPCALTIGNFDGVHLGHQALLARVREAAGKLGLDAAVMTFEPHPREF 60

Query: 45  ----QGGGEKAPPRIANLRDKLQSLSNAGVDRVIVEHFNANFAALSPQDFIEKILIQGLH 100
                G  E+AP RIANLRDKL++L+N+G+DRV+VEHF ++FAALSPQDFIEKIL+QGLH
Sbjct: 61  FAQLAGTPERAPARIANLRDKLEALANSGIDRVVVEHFGSHFAALSPQDFIEKILVQGLH 120

Query: 101 VRWLLVGEDFCFGSRRAGNIQTLIEAGKQYGFEVHTMPNVNNDGVRISSSAIRAALAKAD 160
           VRWL+VG+DFCFG+RRAG + TLI AG+QYGFEVH +P V N GVRISSSA+RAALA+AD
Sbjct: 121 VRWLMVGDDFCFGARRAGTLDTLIAAGQQYGFEVHALPTVTNAGVRISSSAVRAALAEAD 180

Query: 161 FPHARQLLGHAYAISGHVVHGKKLGRTIGFPTLNMRVSHKHPALSGIFIVQVHGLGDKPL 220
           F  +RQLLGH YAISG VVHGKKLGRTIGFPTLNMRV HK PALSGIF+VQVHGL ++PL
Sbjct: 181 FGLSRQLLGHPYAISGRVVHGKKLGRTIGFPTLNMRVGHKRPALSGIFVVQVHGLAEQPL 240

Query: 221 PAVASLGVRPTVDDSGRVLLETHIFDYSGDCYGKLLRVEFLKKLRDEEKYVDLPTLTAAI 280
           PAVASLGVRPTVDDSGRVLLETH+ D+ GDCYGKL+RVEFLKKLRDEEKYVDLPTLTAAI
Sbjct: 241 PAVASLGVRPTVDDSGRVLLETHLLDFKGDCYGKLVRVEFLKKLRDEEKYVDLPTLTAAI 300

Query: 281 ERDAQQARAWFKEQASFAVSATDRI 305
            RD   ARAWF+E A FAVSATDRI
Sbjct: 301 ARDVDHARAWFRENAGFAVSATDRI 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 973,139
Number of extensions: 40855
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)