BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0051.p
         (597 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase [Herb...   982   0.0  
gi|300309767|ref|YP_003773859.1| valyl-tRNA synthetase [Herbaspi...   102   8e-23

>gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 964

 Score =  982 bits (2539), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/515 (89%), Positives = 491/515 (95%)

Query: 1   VEYQDKRDPAIDVGFPFAEHDKIAKAFGLSKLPTDKGYIVIWTTTPWTIPSNQALNVHPE 60
           VEYQDKRDPAIDVGFPFAEHDK+A AFGL+ LPT  GYIVIWTTTPWTIP+NQALNVHPE
Sbjct: 214 VEYQDKRDPAIDVGFPFAEHDKVATAFGLTDLPTRHGYIVIWTTTPWTIPANQALNVHPE 273

Query: 61  FDYALVQTERNGEPTLLILANDLVEASLQRYGLEGKVIATTKGEALSLIAFHHPLAKADP 120
           F+YALV+T RNGE TLLILA DLV + L+R+GLEGK+IATT GE LSLI FHHPLAKAD 
Sbjct: 274 FEYALVETSRNGEATLLILAKDLVASCLERFGLEGKIIATTTGEKLSLIRFHHPLAKADA 333

Query: 121 GYDRLSPIYLGDYVTADSGTGIVHSAPAYGIEDFVSCKAHGMKDDDIISPVMGDGRYASS 180
           GYDRLSP++LG+YVTADSGTGIVHS+PAYGIEDFVSCKAHGMKDDDI++PVMGDGRYAS 
Sbjct: 334 GYDRLSPVFLGEYVTADSGTGIVHSSPAYGIEDFVSCKAHGMKDDDILNPVMGDGRYASW 393

Query: 181 LPLFAGLTIWEASKPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYRATSQWFASMDN 240
           LPLFAGLTIWEASKPIC KLEE+GSLFKL+MF HSYMHCWRHK+PIIYRATSQWFASMDN
Sbjct: 394 LPLFAGLTIWEASKPICDKLEEIGSLFKLIMFSHSYMHCWRHKSPIIYRATSQWFASMDN 453

Query: 241 TPKDGGKSLRETALQGIEDTAFFPAWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 300
           TPKDGG SLR+TALQGIEDTAFFP WGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE
Sbjct: 454 TPKDGGPSLRQTALQGIEDTAFFPGWGKARLHGMIANRPDWTLSRQRQWGVPMAFFVHKE 513

Query: 301 TGLLHPRTPELLEQIAQRIEQGGIEAWQALDPKELLGDEADQYLKNKDTLDVWFDSGSTH 360
           TG LHPRTPELLEQIAQRIEQGGIEAWQALDPKELLGDEADQYLKNKDTLDVWFDSGSTH
Sbjct: 514 TGELHPRTPELLEQIAQRIEQGGIEAWQALDPKELLGDEADQYLKNKDTLDVWFDSGSTH 573

Query: 361 QTVLRGSHKQELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 420
           QTVLRGSH+QELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG
Sbjct: 574 QTVLRGSHRQELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYKALLTHGFVVDGEG 633

Query: 421 RKMSKSLKNGVEPQKVADSLGAEILRLWVASSDYSGEISISDEILKRVTEAYRRIRNTLR 480
           RKMSKSLKNGVEPQKVADSLGAEILRLWVASSDYSGEISIS+EILKRVTEAYRRIRNTLR
Sbjct: 634 RKMSKSLKNGVEPQKVADSLGAEILRLWVASSDYSGEISISEEILKRVTEAYRRIRNTLR 693

Query: 481 FLLANTADFDMAKNAVPVAEMLEIDRYAXVPVAEM 515
           FLLANT+DFD A++AVP+AE+LEIDRYA   +A +
Sbjct: 694 FLLANTSDFDPAQHAVPMAELLEIDRYAIANMARL 728


>gi|300309767|ref|YP_003773859.1| valyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 971

 Score =  102 bits (254), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 146/338 (43%), Gaps = 39/338 (11%)

Query: 120 PGYDRLSPIYLGDYVTADSGTGIVHSAPAYGIEDFVSCKAHGMKDDDIISPVMGDGRYAS 179
           P   R  PI   +YV  + GTG V   PA+   D+     H +   ++IS          
Sbjct: 283 PLVGREIPIIKDEYVDKEFGTGCVKITPAHDFNDYQVGARHNL---EMISVFTLKATINE 339

Query: 180 SLP-LFAGLTIWEASKPICAKLEEVGSLFKLVMFDHSYMHCWRHKTPIIYR--ATSQWFA 236
           + P  + GL  +EA K I A L+ +G L ++    H  M     +T ++     T QWF 
Sbjct: 340 NAPEKYQGLDRFEARKQIVADLDALGLLEQVK--PHKLMVPRGDRTGVVIEPMLTDQWFV 397

Query: 237 SMDNTPKDG----GKSLRETALQGIE--DTAFFPAWGKARLHGMIANRPDWTLSRQRQWG 290
           +M     +G    GKS+ ETAL+ +   +  F P       +  + N  DW +SRQ  WG
Sbjct: 398 AMSKPAPEGTFFPGKSIAETALEKVSSGEIKFVPENWTNTYNQWLNNIQDWCISRQLWWG 457

Query: 291 VPMAFFVHKETGLLHPRTPELLEQIAQRIEQGGIEAWQALDPKELLGDEADQYLKNKDTL 350
             +  +  ++ G+   RT E       R + GG    +A+              +++D L
Sbjct: 458 HQIPAWYDEDGGIYVARTEE-----EARAQAGG----RAVK-------------RDEDVL 495

Query: 351 DVWFDSGSTHQTVL---RGSHKQELQFPADLYLEGSDQHRGWFHSSLLTSSMLNGRAPYK 407
           D WF S     + L     +   +L  P+ + + G D    W    ++ ++   G+ P+ 
Sbjct: 496 DTWFSSALVPFSTLGWPEETPDYKLFLPSSVLVTGFDIIFFWVARMVMMTTHFTGKVPFD 555

Query: 408 ALLTHGFVVDGEGRKMSKSLKNGVEPQKVADSLGAEIL 445
            +  HG V D  G+KMSKS  N ++P  + D +G + L
Sbjct: 556 TVYVHGLVRDASGQKMSKSKGNTLDPIDLIDGIGVDEL 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,801,063
Number of extensions: 76434
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 2
Length of query: 597
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 506
Effective length of database: 1,188,985
Effective search space: 601626410
Effective search space used: 601626410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)