BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0050.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase [Herb...   281   2e-77

>gi|300310736|ref|YP_003774828.1| isoleucyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 964

 Score =  281 bits (720), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 150/169 (88%)

Query: 1   MAPTLSFTAEEAWSFFASKEAFADSSETIFTQTYYTLPEVAQADALVAKFNVLHEVRAAV 60
           MAP LSFTAEEAWSFFA KEAF  S ETIF+Q YY LPEVA A  L+AKF VLHEVRAAV
Sbjct: 796 MAPILSFTAEEAWSFFAGKEAFEASGETIFSQVYYALPEVADAQGLLAKFAVLHEVRAAV 855

Query: 61  TKQLEEVRIAGNIGSSLQAEVELKVSGDKVALLQSLGDDLKFVLITSAAKVTAVAAEADE 120
           TKQLEEVRIAG+IGSSLQAEVELKV+G+K ALL+SLGDDLKFVLITSAA+VT VA+  +E
Sbjct: 856 TKQLEEVRIAGSIGSSLQAEVELKVAGEKAALLESLGDDLKFVLITSAARVTRVASVEEE 915

Query: 121 AIVVTPSANQKCERCWHYRADVGSHPEHEGLCGRCVANLFGRGEDRHFA 169
           A+VVTPSA+QKCERCWHYRADVGSH EH GLCGRCV+NLFG+GE R FA
Sbjct: 916 AVVVTPSAHQKCERCWHYRADVGSHAEHAGLCGRCVSNLFGQGEKRQFA 964


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 417,130
Number of extensions: 12238
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)