BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0045.p
         (146 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310732|ref|YP_003774824.1| hypothetical protein Hsero_1400...   220   3e-59

>gi|300310732|ref|YP_003774824.1| hypothetical protein Hsero_1400
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  220 bits (561), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/146 (70%), Positives = 117/146 (80%)

Query: 1   VLITRGMMNFAKTDEELAYLIAKDMAHNSLGHAIRQRMVATTGSVIDNLMRARPDPTAAA 60
           VLITRGM+ F ++D+ELAYLIAKDMAHN LGHAIRQRMV+T   VIDNL+   PDPT  A
Sbjct: 220 VLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTA 279

Query: 61  GTGGIRPYPQDLDAAADNLALYMLVRAGYGIDGYAAFWQRLATQYPASVPSGYTALHPGT 120
           GT GIR YPQDLDAAAD L+LY+L RAGY ID   AFW+RLA QYPASVP+GYTALHP T
Sbjct: 280 GTAGIRVYPQDLDAAADTLSLYLLARAGYSIDNVPAFWKRLAEQYPASVPNGYTALHPST 339

Query: 121 AYRMTAIDKSVQALRAKQAAGKPLTP 146
            YR+  I+K  Q ++AKQ AGKPL P
Sbjct: 340 TYRLAMIEKVTQIVKAKQEAGKPLVP 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 460,361
Number of extensions: 17528
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,255,275
Effective search space: 86613975
Effective search space used: 86613975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)