BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0043.p (257 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-bind... 433 e-123 gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [... 90 2e-19 gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [H... 87 1e-18 gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subu... 87 2e-18 >gi|300310731|ref|YP_003774823.1| ATP-dependent protease ATP-binding specificity subunit [Herbaspirillum seropedicae SmR1] Length = 767 Score = 433 bits (1113), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/217 (96%), Positives = 213/217 (98%) Query: 1 MAFVEARQSRHEFITVEHLLLALLDNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPG 60 MAFVEARQSRHEFITVEHLLLALLDNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPG Sbjct: 12 MAFVEARQSRHEFITVEHLLLALLDNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPG 71 Query: 61 TNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVT 120 TNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVT Sbjct: 72 TNEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVT 131 Query: 121 RLDVVNFISHGVRKDQQIDSQKAPEGAEDVQTEGQQKESPLDQFTQNLNKAAAEGKIDPL 180 RLDVVNFISHGVRKDQQ D QKAPEGAEDVQ EGQQKESPLDQFTQNLNKAAAEGKIDPL Sbjct: 132 RLDVVNFISHGVRKDQQADPQKAPEGAEDVQAEGQQKESPLDQFTQNLNKAAAEGKIDPL 191 Query: 181 IGRDAEVERVIQTLCRRRKNNPLLVGEAGVGKTAIXD 217 IGR++EVERVIQTLCRRRKNNPLLVGEAGVGKTAI + Sbjct: 192 IGRESEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAE 228 >gi|300310082|ref|YP_003774174.1| ClpA/B-type chaperone protein [Herbaspirillum seropedicae SmR1] Length = 893 Score = 89.7 bits (221), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 42/232 (18%) Query: 14 ITVEHLLLALLDNPSA--AEVLRACSVNID----DLRKTLTNFITDNTPTVPGTNEVDTQ 67 + +EHL LALL+NP + ++R ++ D DL ++ F NT T Sbjct: 35 VDLEHLFLALLENPQTDFSLIVRRSGISPDSLQADLEHEISQFKNGNTRT---------- 84 Query: 68 PTLG--FQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVV 125 P L Q + + + + S + + ++L+A+ + + + Y + R V Sbjct: 85 PVLSSHLQTLFEHGWL-IASLDGERPSIRSGHLLLALLTQTELAQLAYRGSKLFARFKV- 142 Query: 126 NFISHGVRK--------------------DQQIDSQKAPEGAEDVQTEGQQKESPLDQFT 165 + + H + K D Q D Q+ + +++ G + LDQ+T Sbjct: 143 DELKHDLAKLTEGSVEAPALASASASAAADGQADEQQGGDPVGEMRAGG--RTPALDQYT 200 Query: 166 QNLNKAAAEGKIDPLIGRDAEVERVIQTLCRRRKNNPLLVGEAGVGKTAIXD 217 NL + A EGKIDP++GRD E+ + + L RRR+NNP+L GEAGVGKTA+ + Sbjct: 201 TNLTQRAREGKIDPVVGRDGEIRQAVDILLRRRQNNPILTGEAGVGKTAVVE 252 >gi|300313318|ref|YP_003777410.1| ClpA/B-type chaperone ATPase [Herbaspirillum seropedicae SmR1] Length = 889 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 34/229 (14%) Query: 11 HEFITVEHLLLALLDNPSAAEVLRACSVNID------DLRKTLTNFITDN--TPTVPGTN 62 H + +EHL LALL+ P + L A ID DL ++ F N TP + Sbjct: 32 HYEVDLEHLFLALLEQPQSDFSLIARRSGIDTDGLQADLEHEISTFREGNARTPVL---- 87 Query: 63 EVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRL 122 P L R + + S V A++L+A+ + D + Y + + Sbjct: 88 ----SPHL---RTLFENGWLIASLEESNPSVRSAHLLLALLTQSDLSQLAYRGSKLFAKF 140 Query: 123 DVVNFISHGVRKDQQIDSQKAP----------EGAEDVQTEGQQ----KESPLDQFTQNL 168 + + I H + + + + A E D E +Q K + LDQ+T L Sbjct: 141 KI-DEIKHNLHRLTEGSVESAAIGKTGQGGDRESGGDPMGELKQLRIGKMTALDQYTTQL 199 Query: 169 NKAAAEGKIDPLIGRDAEVERVIQTLCRRRKNNPLLVGEAGVGKTAIXD 217 + A +GKIDP+IGRDAE+ + + L RRR+NNP+L GEAGVGKTA+ + Sbjct: 200 TQRARDGKIDPVIGRDAEIRQAVDILLRRRQNNPILTGEAGVGKTAVVE 248 >gi|300311426|ref|YP_003775518.1| ATP-dependent Clp protease subunit [Herbaspirillum seropedicae SmR1] Length = 861 Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 109/209 (52%), Gaps = 19/209 (9%) Query: 11 HEFITVEHLLLALL--DNPSAAEVLRACSVNIDDLRKTLTNFITDNTPTVPGTNEVDTQP 68 +++I HL+LALL ++ A +L+ VN++ L L + P V G + Sbjct: 26 NQYIEPVHLILALLNQEDGGARSLLQRAGVNVNGLSAALQAAVK-RLPQVSGNG---GEV 81 Query: 69 TLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFI 128 +G + V + ++ +G + V VL+ + +K S A + G+TR + I Sbjct: 82 QVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDK-SDAGRAARENGLTRKSLEAAI 140 Query: 129 SHGVRKDQQIDSQKAPEGAEDVQTEGQQKESPLDQFTQNLNKAAAEGKIDPLIGRDAEVE 188 + VR + SQ Q EGQ++ L ++T +L + A GK+DP+IGRD E+ Sbjct: 141 T-AVRGGASVSSQ---------QDEGQRE--ALKKYTLDLTERARAGKLDPVIGRDDEIR 188 Query: 189 RVIQTLCRRRKNNPLLVGEAGVGKTAIXD 217 R IQ L RR KNNP+L+GE GVGKTAI + Sbjct: 189 RAIQVLQRRSKNNPVLIGEPGVGKTAIVE 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 786,614 Number of extensions: 31447 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 4 Length of query: 257 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 174 Effective length of database: 1,226,865 Effective search space: 213474510 Effective search space used: 213474510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)