BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0030.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310721|ref|YP_003774813.1| penicillin-binding 1 (peptidogl...   191   2e-50
gi|300313465|ref|YP_003777557.1| penicillin-binding 1 (peptidogl...   129   1e-31

>gi|300310721|ref|YP_003774813.1| penicillin-binding 1
           (peptidoglycan synthetase) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 822

 Score =  191 bits (486), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 91/114 (79%), Positives = 105/114 (92%)

Query: 4   LSLQRGFLNPNIAKFLAFSVLGLVIIGALIIAYALIFINPRLPSLDVITDYRPKIPLRIY 63
           L+ QRGFLNPNIAKF+  S+LGL + GAL++ YALIFINPRLPSL++ITDYRPK+PLRI+
Sbjct: 14  LTRQRGFLNPNIAKFIGLSILGLGVAGALLVVYALIFINPRLPSLELITDYRPKVPLRIW 73

Query: 64  SADNVLLGEFGEEKRSLVKLDDIPANMKNAVLAIEDNRFYQHGGIDYIGIARAI 117
           S D VLLGEFGEEKRSLVKLDDIPA+MKNAVLAIED RFY+HGGID+IGIARA+
Sbjct: 74  SEDKVLLGEFGEEKRSLVKLDDIPADMKNAVLAIEDYRFYEHGGIDWIGIARAL 127


>gi|300313465|ref|YP_003777557.1| penicillin-binding 1
           (peptidoglycan synthetase) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 771

 Score =  129 bits (324), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 59/98 (60%), Positives = 75/98 (76%)

Query: 19  LAFSVLGLVIIGALIIAYALIFINPRLPSLDVITDYRPKIPLRIYSADNVLLGEFGEEKR 78
           L  ++ GL ++  L + + +    P+LP LD +TDYRPKIPLRI+SAD VL+GEFGEE+R
Sbjct: 11  LVGTIFGLAVMVLLGVTFIVALTYPKLPDLDTLTDYRPKIPLRIFSADGVLIGEFGEERR 70

Query: 79  SLVKLDDIPANMKNAVLAIEDNRFYQHGGIDYIGIARA 116
           +LV   DIP  MK AVLAIED+RFY+HGG+DY GIARA
Sbjct: 71  NLVHFKDIPEIMKKAVLAIEDDRFYEHGGVDYQGIARA 108


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 395,269
Number of extensions: 10742
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)