BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0028.p
         (75 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310721|ref|YP_003774813.1| penicillin-binding 1 (peptidogl...    67   4e-13

>gi|300310721|ref|YP_003774813.1| penicillin-binding 1
           (peptidoglycan synthetase) transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 822

 Score = 66.6 bits (161), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 13/58 (22%)

Query: 4   IRFIDGEPYYENFTPGNGFVASLGVEGGGVVDALSNFFGWSKNPNSETQAAPSSGPAS 61
           IRFIDGEPYY+NFTP NG V ++GV    VVDA+SNFFGW+          PS  PA+
Sbjct: 740 IRFIDGEPYYDNFTPNNGLVTNVGVT---VVDAISNFFGWT----------PSQAPAT 784


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 214,144
Number of extensions: 6628
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 75
Length of database: 1,619,870
Length adjustment: 46
Effective length of query: 29
Effective length of database: 1,402,060
Effective search space: 40659740
Effective search space used: 40659740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 123 (52.0 bits)