BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0026.p
         (339 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...   152   3e-38
gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...    66   5e-12

>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 69/105 (65%), Positives = 84/105 (80%)

Query: 44  IAQRVAACTACHGKEGRASSDGYYPRIAGKPEGYLYNQLTNFRDGHRQYPLMTYLLDHLS 103
           +A+R+AACTACHGK+GRA++DGYYPRIAGKPE YL NQL +FRDG R+YP+M YLL +LS
Sbjct: 45  MAERMAACTACHGKQGRATADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANLS 104

Query: 104 DAYLHEIAAYFSAQHPPYPAPQPVEATPAVLERGRTLVMNGDSSK 148
           D YL +IA +F+ QHPPYP P   EA+  VLERGR LV  GD  +
Sbjct: 105 DDYLQQIARFFADQHPPYPPPASNEASATVLERGRRLVTEGDPQR 149


>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 3   SLMLSPVAARFSRIAHVALLALSALWIVAAAPAHAQQLPDT--IAQRVAACTACHGKEGR 60
           S +L  V A F  +A  A  A      V A PA  + L      A+ + AC +CHG  G 
Sbjct: 6   SPLLYSVFAAFLAVASTAHAADDKKAPVKADPAKGEALYTNGDSARNIVACVSCHGAAGN 65

Query: 61  ASSDGYYPRIAGKPEGYLYNQLTNFRDGHRQYPLMTYLLDHLSDAYLHEIAAYFSAQHP 119
            S+    P++AG+ E Y+  QL NFR   R  P+M+ +   LSD  +H +AA+ +AQ P
Sbjct: 66  -STITQNPKLAGQHEAYIAKQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQAP 123


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,189,493
Number of extensions: 53264
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,212,660
Effective search space: 306802980
Effective search space used: 306802980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)