BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0017.p
         (454 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptida...   467   e-132
gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase [Her...   263   3e-71

>gi|300310715|ref|YP_003774807.1| ATP-dependent Zn metallopeptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 629

 Score =  467 bits (1201), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 226/235 (96%), Positives = 231/235 (98%)

Query: 220 VNNMFSKAAIWVVIALVLFMVFKQFDSRSLASGATPIAYSDFISEVKAGHIKDATIEDRS 279
           +NNMFSKAAIWVVIALVLFMVFKQFDSRS+A+ A  IAYSDFISEVKAGHIKDATIEDR+
Sbjct: 1   MNNMFSKAAIWVVIALVLFMVFKQFDSRSMATNAKAIAYSDFISEVKAGHIKDATIEDRT 60

Query: 280 IVATTQDGKKVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV 339
           IVATTQDG KVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV
Sbjct: 61  IVATTQDGTKVKTAATYLDRGLVGDLLNNGVKFDVKQPEEQSFLSQVFISWFPMLLLIGV 120

Query: 340 WVFFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT 399
           W+FFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT
Sbjct: 121 WIFFMRQMQGGGKGGAFSFGKSKARMLDENSNSVTFADVAGCDEAKEEVQELVEFLRDPT 180

Query: 400 KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGA 454
           KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGA
Sbjct: 181 KFQKLGGRIPHGVLMVGPPGTGKTLLARAIAGEAKVPFFTISGSDFVEMFVGVGA 235



 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/36 (100%), Positives = 36/36 (100%)

Query: 8   FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHR 43
           FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHR
Sbjct: 230 FVGVGASRVRDMFENAKKHAPCIIFIDEIDAVGRHR 265


>gi|300310714|ref|YP_003774806.1| 23S rRNA methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  263 bits (671), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 151/168 (89%), Gaps = 1/168 (0%)

Query: 44  PY-KLKEIDEEEXRAAYKLKEIDEEEKLIKPGQVIVDLGSTPGSWSQYARNKLAGLEGGG 102
           PY KL + +    RAAYKLKEIDEEE+LIKPGQVIVDLG TPGSW QY RNKLAG EGGG
Sbjct: 18  PYVKLAQKEGYRARAAYKLKEIDEEERLIKPGQVIVDLGCTPGSWCQYVRNKLAGAEGGG 77

Query: 103 IRGTIIGLDMLPMDPIADVHFIQGDFREEDSLRQLEAILDGRQVDLVLSDMAPNLSGVAI 162
           I GTIIGLD+LPMDPIADVH+IQGDFRE++ +RQLEA+LDGR+ DLVLSDMAPNLSGVAI
Sbjct: 78  IHGTIIGLDILPMDPIADVHYIQGDFREDEPVRQLEAVLDGRKADLVLSDMAPNLSGVAI 137

Query: 163 SDAARVEHLIDLAIEFAQAHMKPTGSVLVKCFNGTGYNELVHKFRAEL 210
           +DAARVE+LIDLAI+FAQ HMKP GS+LVKCFNGTGYNELVHKFRAE 
Sbjct: 138 ADAARVEYLIDLAIDFAQLHMKPGGSLLVKCFNGTGYNELVHKFRAEF 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,321,992
Number of extensions: 53675
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 3
Length of query: 454
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,203,190
Effective search space: 440367540
Effective search space used: 440367540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)