BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0010.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   193   3e-51
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...    57   3e-10

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  193 bits (490), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 107/117 (91%), Gaps = 1/117 (0%)

Query: 1   VFQSVRIGDHYYVDGGLVAPVPVHFAREMGADFVIAVNISAQPEAQA-SASSVDVMLQTF 59
           VFQSV+IGDH YVDGGLV+PVPV FAR+MGADFVIAVNISA PEAQA S+SSVDV+LQTF
Sbjct: 194 VFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQAASSSSVDVLLQTF 253

Query: 60  AIMGQSINNYELKDADVVIQPGLGAMKGSDFAGRNLAILAGEQATMKAMADLKAKLK 116
           AIMGQ+IN YELK+AD+V+QPGLGAMKGSDFA RN+AI+AGEQA + AM ++K KLK
Sbjct: 254 AIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMAGEQAALAAMPEIKRKLK 310


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score = 57.4 bits (137), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 4/115 (3%)

Query: 1   VFQSVRIGDHYYVDGGLVAPVPVHFAREMGADFVIAVNISAQPEAQASASSVDVMLQTFA 60
           +F   RI     VDGGLV+ +PV  AR+MGAD VIAVNI+   +  A   S   + Q   
Sbjct: 212 LFAPFRIDQRTLVDGGLVSNLPVQTARDMGADVVIAVNIATPLQDAAQLQSPTAVAQQMV 271

Query: 61  --IMGQSINNYE--LKDADVVIQPGLGAMKGSDFAGRNLAILAGEQATMKAMADL 111
             ++ Q++   +  L   D++I+P +  M  +DFA     + AG +A  +  A L
Sbjct: 272 GILIQQNVKAQKALLGAQDILIEPQMEGMSFTDFARGKDGVNAGWEAAQRQQARL 326


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 293,398
Number of extensions: 8383
Number of successful extensions: 36
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)