BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0009.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   179   1e-46
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...    61   7e-11

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  179 bits (454), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 106/120 (88%), Gaps = 3/120 (2%)

Query: 11  TSPVVPVATPTKLPQKPRIALALGGGAARGFAHVGVIKALESQGIVPDIVVGTSAGSLVG 70
           +S V PV +PT  P++ +I LALGGGAARGFAH+GVIKALE+QG+  D+V GTSAGSLVG
Sbjct: 41  SSTVTPV-SPT--PRRLKIGLALGGGAARGFAHIGVIKALEAQGVQVDVVTGTSAGSLVG 97

Query: 71  ALYAAGNNGFALQKLALDMDEATISDWSVPFFAKVSGVLKGEGVQAYVNRSVNNLPIEKW 130
           ALYAAGN+GFALQKLAL MDEA ISDWSVP F+KVSGVLKGEGVQ YVN+++NN+PIEK+
Sbjct: 98  ALYAAGNDGFALQKLALAMDEAAISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKF 157


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane
          protein [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score = 60.8 bits (146), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)

Query: 26 KPRIALALGGGAARGFAHVGVIKALESQGIVPDIVVGTSAGSLVGALYAAGNNGFALQK 84
          +PR+ L L GG ARG+AH+GV++ LE   I  D + GTS G+L+G LYA+G +   L++
Sbjct: 41 RPRVCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTSMGALIGGLYASGLDAGELER 99


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 540,217
Number of extensions: 22312
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)