BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0005.p
         (130 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313764|ref|YP_003777856.1| Fe2+-dicitrate sensor membrane ...    96   7e-22
gi|300309380|ref|YP_003773472.1| Fe2+-dicitrate sensor membrane ...    75   2e-15
gi|300312829|ref|YP_003776921.1| Fe2+-dicitrate sensor membrane ...    72   2e-14
gi|300311747|ref|YP_003775839.1| Fe2+-dicitrate sensor membrane ...    62   2e-11

>gi|300313764|ref|YP_003777856.1| Fe2+-dicitrate sensor membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 326

 Score = 96.3 bits (238), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 3/130 (2%)

Query: 1   MQIAVFEGAVEFKPAGTSVIGAIRIDAGRQGLFDRRGLIGSLSPANEEAVAWTDGFIVAD 60
           +++AV +GAVE  PA ++    +   +G Q  F R G   +  P ++   AW+ G ++A+
Sbjct: 199 VEVAVLQGAVEITPASSAQQTVL--PSGMQTRFTRSG-SAAPRPCDDTQAAWSRGLLIAE 255

Query: 61  RMPLGELVAELDRSMPGELRCDPAVAGLTISGVFPLDQPAHILAAIARTLPVQIDTFTPY 120
           RMPL + + EL R   G L+ DPA+AGL +SGVFPL     +L  +A+TLPV++   T Y
Sbjct: 256 RMPLAQFIGELGRYRSGLLQADPAIAGLEVSGVFPLADTDRVLRLLAQTLPVRVQQLTRY 315

Query: 121 WITLRPRTGA 130
           W+ + P T A
Sbjct: 316 WVRVLPATPA 325


>gi|300309380|ref|YP_003773472.1| Fe2+-dicitrate sensor membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 74.7 bits (182), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 2/120 (1%)

Query: 2   QIAVFEGAVEFKPAGTSVIGAIRIDAGRQGLFDRRGLIGSLSPANEEAVAWTDGFIVADR 61
           +++V+EGAV   P   +    + + AG+Q  F  +G +G ++ A+E  +AWTDG IVA  
Sbjct: 206 EVSVWEGAVRLVPRQAAQQARV-LQAGQQAAFSAQG-VGDVTTADETRMAWTDGVIVARG 263

Query: 62  MPLGELVAELDRSMPGELRCDPAVAGLTISGVFPLDQPAHILAAIARTLPVQIDTFTPYW 121
           M L   +AEL R     L C PAV+G+ ISG +P+     ++A +A  L +Q      +W
Sbjct: 264 MRLDAFLAELGRYTTDRLSCAPAVSGVRISGSYPVADSDAVIATLAAALGLQAQLRQRFW 323


>gi|300312829|ref|YP_003776921.1| Fe2+-dicitrate sensor membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 316

 Score = 72.0 bits (175), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 27  AGRQGLFDRRGLIGSLSPANEEAVAWTDGFIVADRMPLGELVAELDRSMPGELRCDPAVA 86
           AG++  FD+   IG+   A     +W +G+  A    L E+VA L     G LR DPAVA
Sbjct: 216 AGQRTWFDQ-DEIGAPRAAGGAENSWVEGYYTASDNSLEEVVAALRPYRKGLLRLDPAVA 274

Query: 87  GLTISGVFPLDQPAHILAAIARTLPVQIDTFTPYWITLRPRT 128
            L ISG FPLD     L+A+A  LP+ ++  +PYW+++  R+
Sbjct: 275 QLRISGAFPLDDTDRALSALASALPITVNRVSPYWVSISGRS 316


>gi|300311747|ref|YP_003775839.1| Fe2+-dicitrate sensor membrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 342

 Score = 61.6 bits (148), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 2   QIAVFEGAVEFKPAGTSVI----GAIRIDAGRQGLFDRRGLIGSLSPANEEAVAWTDGFI 57
           Q+ V EG V    AG   +    G I +D    G   RR    S      +  AW +  +
Sbjct: 215 QLTVLEGRVAVHVAGVDPLVAQPGEI-VDIHPDGRLVRRAARASAM----DPTAWLEQSL 269

Query: 58  VADRMPLGELVAELDRSMPGELRCDPAVAGLTISGVFPLDQPAHILAAIARTLPVQIDTF 117
           V  +M L ++VA+L R   G L+CDPAVA   +SGVF L      L A+A+ LP+ I+  
Sbjct: 270 VVRQMRLADVVAQLARYRSGWLQCDPAVADWQVSGVFQLQDTDVALEALAQALPLTIERR 329

Query: 118 TPYWI 122
           T +W+
Sbjct: 330 TRFWV 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 475,170
Number of extensions: 21573
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 4
Length of query: 130
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 55
Effective length of database: 1,264,745
Effective search space: 69560975
Effective search space used: 69560975
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)