BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0082.0003.p (580 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309869|ref|YP_003773961.1| TonB-dependent ferric sideropho... 807 0.0 gi|300309379|ref|YP_003773471.1| TonB-dependent ferric sideropho... 496 e-141 gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore rece... 313 3e-86 gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore rece... 109 5e-25 gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 105 7e-24 >gi|300309869|ref|YP_003773961.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 725 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/612 (66%), Positives = 481/612 (78%), Gaps = 35/612 (5%) Query: 1 VIANDASVRNTNGNGGFGDSYQIRGFTMSANDVAFNGLYGMVPLTRMPIAMVERIEVLKG 60 VI ++ASVRNTNG+GGFGDSYQIRG +S ND FNGLYG+V L+RM AM+ER+EVLKG Sbjct: 117 VITSEASVRNTNGDGGFGDSYQIRGLPVSVNDTGFNGLYGLVSLSRMSTAMLERVEVLKG 176 Query: 61 PGTLMYGMGPSGGVGGAVNLVSKRAHEDPISSVTATYLSNSQFGLKGDIGRRFGENQEWG 120 PGTLMYGMGP+GGVGGA+NLVSKRA E+P+SS+TATY+ ++Q GL+GDIGRRFG+++EWG Sbjct: 177 PGTLMYGMGPAGGVGGAINLVSKRAGEEPVSSLTATYVGSAQLGLQGDIGRRFGQDKEWG 236 Query: 121 IRVNALYADGNTGLSGSNQQQSMGSVGLDYNGGRVRWSLDAYTQHEDTRNFRPQFSINSA 180 IRVNALYADG T ++ + QQQSMGS+ LDY G ++RW+LDAYTQHEDTRNFRPQFSI + Sbjct: 237 IRVNALYADGRTSVADNRQQQSMGSLALDYTGRKLRWTLDAYTQHEDTRNFRPQFSIGT- 295 Query: 181 LTAMPSAPSGETNLYQGNTMQSDDKAVATRLEYDIDDSLTAYGAVGYHVAQSSQNFPRAT 240 T+MPSAP+G++NLY GNT+Q DDK VATRLEYD+ + LTAYGA+GYH ++Q+FP AT Sbjct: 296 -TSMPSAPAGDSNLYPGNTLQIDDKVVATRLEYDLTEQLTAYGAIGYHEGATAQSFPSAT 354 Query: 241 ITSVQGATSVTNGYYDQXL--------------------------------PDFFYRMAA 268 IT + GATSV NGYYDQ + +FY + A Sbjct: 355 ITGLDGATSVRNGYYDQKVVSTSADVGLRARFATGPVQHTLSMAANTLDQQTSYFYFVNA 414 Query: 269 TGVVSNLYSPVSLGALNFARTEPTPQSQTRLTSFALTDTLSMLDDRLRLIAGLRRQQVYN 328 TGV SNLY P L + AR EP PQSQTRL+ ALTDTLS+ D RL L GLRRQQVY+ Sbjct: 415 TGVASNLYQPAPLAPVTAARGEPLPQSQTRLSGLALTDTLSIADGRLLLTGGLRRQQVYS 474 Query: 329 HSLVTASQTSNKTAVSPVLGVVVKPLENLSLYANYTAALSSGGFAAATAVNAGEAFPPYK 388 +S + +SNK SPVLGVVVKPLENLSLYANYTA LS+GGFA A NAG+AF PYK Sbjct: 475 NS-FSTRSSSNKIGYSPVLGVVVKPLENLSLYANYTAGLSAGGFAGAQYANAGQAFAPYK 533 Query: 389 SKQYETGVKVDWGRVTTTAAVFQIEQANSTTTTINGLSYTSQDGRARIRGLELAAYGELQ 448 +KQYE+GVK+DWGRVTTTAAVFQIE+ANS+T + ++ +QDGRAR+RGLEL+AYGE Q Sbjct: 534 TKQYESGVKLDWGRVTTTAAVFQIERANSSTAVVGSQTFATQDGRARVRGLELSAYGEAQ 593 Query: 449 RGLRFNASGTFFATEQSHTANGAADGKEIGAVPKHNFNLGLDWDTPWLTGLALNTRITNT 508 RGLR ASGTFF T QSHT G DGKEIGAVPKHNFNLG DWDTPWL GLALNTRI NT Sbjct: 594 RGLRLMASGTFFETRQSHTVGGTNDGKEIGAVPKHNFNLGADWDTPWLQGLALNTRIINT 653 Query: 509 GAMLYSNSSSLKVPGWTRTDIGARYISKAAGQVITYRANIENLFDKNYWVMQNGYVGTSS 568 GA YS+++++KVPGWTR D+GARY S+ GQ ITYRAN+ENLFDK+YW+MQNGY G + Sbjct: 654 GASWYSDANTVKVPGWTRMDLGARYTSRLGGQTITYRANLENLFDKHYWIMQNGYAGYGA 713 Query: 569 GRTFVLSAQVDF 580 GRT VLSAQVDF Sbjct: 714 GRTLVLSAQVDF 725 >gi|300309379|ref|YP_003773471.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 790 Score = 496 bits (1277), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/618 (42%), Positives = 372/618 (60%), Gaps = 40/618 (6%) Query: 2 IANDASVRNTNGNGGFGDSYQIRGFTMSANDVAFNGLYGMVPLTRMPIAMVERIEVLKGP 61 + NDAS+R GGFG++YQIRG+ +++ DV NGL+G+ RMP M+ER++VLKGP Sbjct: 174 VLNDASIRMLTSTGGFGETYQIRGYGLTSGDVGVNGLFGLASGNRMPAVMIERVDVLKGP 233 Query: 62 GTLMYGMGPSGGVGGAVNLVSKRAHEDPISSVTATYLSNSQFGLKGDIGRRFGENQEWGI 121 GTL++G+ P G +GG++NLV+KRA ++P++ +TA Y S Q G++ D+GRRFG WGI Sbjct: 234 GTLLHGISPEGSIGGSINLVTKRAEDEPLTRLTALYQSRRQPGVQVDLGRRFGTQDAWGI 293 Query: 122 RVNALYADGNTGLSGSNQQQSMGSVGLDYNGGRVRWSLDAYTQHEDTRNFRPQFSINSAL 181 R N + G ++G Q G++ LDY G RWSLDAY Q E++ +FRPQ + Sbjct: 294 RFNTVLRRGEASIAGGRQDAGAGALALDYRGRGWRWSLDAYRQRENSSDFRPQVGFLPGV 353 Query: 182 TAMPSAPSGETNLYQGNTMQSDDKAVATRLEYDIDDSLTAYGAVGYHVAQSSQNFPRATI 241 TA+P+ PSG+ + + GN + D A+ TR+E ++ + L+AY AVG + + QN P ++ Sbjct: 354 TALPAPPSGDLDFFSGNQLSFQDDALLTRVEVELSEQLSAYAAVGQRRSATQQNLPTGSV 413 Query: 242 TSVQGATSVTNGYYDQX----LPDFFYRM-AATGVVSN---------------------- 274 + GA SV N YYD D R+ AATG V + Sbjct: 414 DA-SGAGSVRNAYYDTASRTLSADAGLRLQAATGAVRHGVSLGVTRLRQQAGNAYLVSAD 472 Query: 275 -----LYSPVSLGALNFARTEPTPQSQTRLTSFALTDTLSMLDDRLRLIAGLRRQQVYNH 329 LY+P +L ++ ARTEP L S +LTDTL +L+DRL+L+ G RRQ V Sbjct: 473 SSAYSLYAPATLPVISAARTEPRKAYDMTLDSLSLTDTLRLLEDRLQLLVGARRQSVRYD 532 Query: 330 SL--VTASQTSN--KTAVSPVLGVVVKPLENLSLYANYTAALSSGGFAAATAVNAGEAFP 385 S V+ +Q S+ +A+SP+LG+VVKP+ LSLYAN T+ L+ G NAG+ Sbjct: 533 SFDTVSGAQLSSYEASAISPLLGLVVKPVAGLSLYANTTSGLTRGTIVPTGLANAGQVLA 592 Query: 386 PYKSKQYETGVKVDWGRVTTTAAVFQIEQANSTTTTINGLSYTSQ---DGRARIRGLELA 442 PY+S+Q E G K+DWGRV T AA FQI+ ++ TT +S DGR R RGLEL+ Sbjct: 593 PYRSRQLEAGAKLDWGRVMTQAAWFQIDNPSAVITTQASTPASSSYGYDGRQRNRGLELS 652 Query: 443 AYGELQRGLRFNASGTFFATEQSHTANGAADGKEIGAVPKHNFNLGLDWDTPWLTGLALN 502 AYGEL RGLR AS TF+ TANG DG+ VP NL LDW+ L GLA + Sbjct: 653 AYGELMRGLRLLASATFYQARLLRTANGLNDGRTAPGVPLRAANLSLDWEPAGLPGLAFS 712 Query: 503 TRITNTGAMLYSNSSSLKVPGWTRTDIGARYISKAAGQVITYRANIENLFDKNYWVMQNG 562 R+ +TG + Y +++L++P WTR D+G RY S+ + + +R N+ENLF+ + W++ Sbjct: 713 GRMIHTGPVYYDAANTLRLPSWTRWDLGVRYRSRLGERPVVWRLNVENLFNHSTWLLDKP 772 Query: 563 YVGTSSGRTFVLSAQVDF 580 YV ++ RT +LS QVD+ Sbjct: 773 YVTVAAPRTVLLSMQVDW 790 >gi|300311911|ref|YP_003776003.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 733 Score = 313 bits (801), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 206/632 (32%), Positives = 320/632 (50%), Gaps = 55/632 (8%) Query: 1 VIANDASVRNTNGNGGFGDSYQIRGFTMSANDVAFNGLYGMVPLTRMPIAMVERIEVLKG 60 V+ ND VR T G G F +SY IRGF +++D+ +NGL+G++P + M+ER+EV G Sbjct: 105 VLKNDPVVRTTRGFGNFQESYMIRGFIANSDDLMYNGLFGILPRQYVASEMMERVEVQYG 164 Query: 61 PGTLMYGMGP-SGGVGGAVNLVSKRAHEDPISSVTATYLS-NSQFGLKGDIGRRFGENQE 118 + G P G+GG +N+V KRA +P++ +T Y S NSQ+ D+ RRFG + Sbjct: 165 ASAFLNGATPGDAGLGGTINIVPKRAANEPLTDLTLGYESGNSQYAAL-DVSRRFGPQER 223 Query: 119 WGIRVNALYADGNTGLSGSNQQQSMGSVGLDYNGGRVRWSLDAYTQHEDTRNFRPQFSIN 178 G+R+NA G TG++ ++ ++ S+G+DY G R S D Q + N RP +I Sbjct: 224 LGVRINAARHAGGTGVANERRETNLFSLGVDYRGNDFRLSADLGLQENNLSNVRPSVTIG 283 Query: 179 SALTAMPSAPSGETNLYQGNTMQSDDKAVAT-RLEYDIDDSLTAYGAVGYHVAQSSQNFP 237 + LT++P APSG N Q + + T R E+D+ S TA+ A G + + Sbjct: 284 AGLTSLPVAPSGSANYGQPWSYSNARDLFGTVRGEWDLSSSTTAWAAFGARQGTENNSLS 343 Query: 238 RATITSVQGATSVTNGYYDQXLPDFF----------------YRMAAT------------ 269 +T+ + T + + D +++ A Sbjct: 344 GVRVTNASTGAAATYRFDNARQDDVATGEVGVRTHLQTGAVSHKLVAAASAYSLNSRNAY 403 Query: 270 ------GVVSNLYSPV-----SLGALNFARTEPTPQSQTRLTSFALTDTLSMLDDRLRLI 318 + +NLY+P +L +L + +P +T L S ++DTL DDR+ + Sbjct: 404 GLSPSYALATNLYNPTNYAQPALTSLGNSLADPQTTIKTNLLSAVVSDTLGFYDDRVLVT 463 Query: 319 AGLRRQQVYNHSLVTASQTS----NKTAVSPVLGVVVKPLENLSLYANYTAALSSGG-FA 373 G+R+QQ+ + + +Q + +++A SP+ GVV K + LS+Y NY L G Sbjct: 464 VGVRQQQLKSDTYAYNTQANTAHYDQSATSPMAGVVFKLTKTLSVYGNYIEGLQQGKQIT 523 Query: 374 AATAVNAGEAFPPYKSKQYETGVKVDWGRVTTTAAVFQIEQANSTTTTINGLSYTSQDGR 433 TA N G+ PYKSKQ E GVK + G + AA F ++ S + + T +G+ Sbjct: 524 DTTAANYGQVLAPYKSKQKEVGVKYELGGLGLGAAFFTTDRPLSYKDAVTNIEAT--NGK 581 Query: 434 ARIRGLELAAYGELQRGLRFNASGTFFATEQSHTANGAADGKEIGAVPKHNFNLGLDWDT 493 R RG+EL AYGE+ +G+R + TF +Q T + A +GK VP+ N GL+ D Sbjct: 582 QRNRGVELTAYGEVTKGVRLLSGLTFLDAKQVQTNSSANNGKYAIGVPRVQANAGLEVDV 641 Query: 494 PWLTGLALNTRITNTGAMLYSNSSSLKVPGWTRTDIGARYISKAAGQVITYRANIENLFD 553 P + GL LN R T T ++ L+VP W R D+GARY++ G +T RA+I+N+ + Sbjct: 642 PGVRGLTLNGRATYTSTQYVDAANQLEVPSWVRYDLGARYLTDIGGHAVTLRASIDNVAN 701 Query: 554 KNYW-----VMQNGYVGTSSGRTFVLSAQVDF 580 +NYW +GY+ + RTF S V F Sbjct: 702 RNYWQSAGGASNSGYLVAGNPRTFSTSVSVAF 733 >gi|300310319|ref|YP_003774411.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 723 Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 16/297 (5%) Query: 297 TRLTSFALTDTLSMLDDRLRLIAGLRR----QQVYNHSLVTASQTSNKTAVSPVLGVVVK 352 +R + +D + R +++AG R+ +Q +N + TS + P L ++ K Sbjct: 430 SRQKALFFSDRM-QFSQRWQVLAGGRQVWLNEQSFNSTGAVTRDTS-RNLFLPQLALIFK 487 Query: 353 PLENLSLYANYTAALSSGGFAAATAVNAGEAFPPYKSKQYETGVKVDWG-RVTTTAAVFQ 411 P++NLSLY +Y LS G A N PP ++Q E GVK ++ + TAAVF+ Sbjct: 488 PVQNLSLYGSYAETLSLGSSAPFWVSNFPVTLPPSVARQLEAGVKYEFSPELALTAAVFR 547 Query: 412 IEQANSTTTTIN---GLSYTSQDGRARIRGLELAAYGELQRGLRFNASGTFFATEQSHTA 468 +A N G +Y Q G+ G+EL A G+L L A+ T S T Sbjct: 548 TRKAYEYQKPDNSPTGFTYVQQ-GQQTNTGVELGANGKLTPRLAIGAAATVLRARASDTG 606 Query: 469 NGAADGKEIGAVPKHNFNLGLDWDTPWLTGLALNTRITNTGAMLYSNSSSLKVPGWTRTD 528 D +++ VP+ + D+ P + G+ + + + + S+ +P + Sbjct: 607 TARFDDQQVVNVPRLRTAVYADYAVPGMEGVNVMGSWNYSASKPATRDGSVNLPAVHVFN 666 Query: 529 IGARYISKAAGQVITYRANIENLFDKNYW-----VMQNGYVGTSSGRTFVLSAQVDF 580 G RY + G T RANI+NLFDK YW + +GYV + RT LS Q DF Sbjct: 667 AGLRYQLRVNGHAATLRANIDNLFDKRYWKDAGQYLGDGYVHLGAPRTARLSLQYDF 723 Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 11/219 (5%) Query: 1 VIANDASVRNTNGNGGFGDSYQIRGFTMS-ANDVAFNGLYGMVPLTRMPIAMVERIEVLK 59 V+ NDAS+ G+ +++ IRGFT+ A+ NGL T + + ER+E LK Sbjct: 95 VVKNDASINENYAPVGYYENFSIRGFTLDPASAYRVNGLTVAGEQT-IALENKERVEFLK 153 Query: 60 GPGTLMYGMGPSGGVGGAVNLVSKRAHEDPISSVTATYLSNSQFGLKGDIGRRFGENQEW 119 G L G+ +GG+ VN V+KR + S+T SN L D+G FGE++++ Sbjct: 154 GVAGLQAGVVAAGGL---VNYVTKRPAN--VRSITLGTDSNGSRYLATDLGALFGEHKQF 208 Query: 120 GIRVNALYADGNTGLSGSNQQQSMGSVGLDYN-GGRVRWSLDAYTQHEDTRNFRPQFSIN 178 G+R+NA + D ++ +S + + S+ + R DA Q + R+ + Sbjct: 209 GLRINAAHEDIHSYVSNGDGWRDFASLSATWAISARTLVQFDAEYQQKAQRSVAGYQLLG 268 Query: 179 SALTAMPSAPSGETNLY-QGNTMQSDDKAVATRLEYDID 216 A +PS S T L Q + D +V RL D + Sbjct: 269 GA--TLPSGVSPSTMLTPQPWSQPVRDSSVNARLRIDTE 305 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 152/599 (25%), Positives = 257/599 (42%), Gaps = 99/599 (16%) Query: 19 DSYQIRGFTMSANDVAFNGLYGMVPLTRMPIAMVERIEVLKGPGTLMYGMGPSGGVGGAV 78 DS + G +A+ LYG+ +++EVLKGPG+L+YG+ GG+ V Sbjct: 132 DSLYLDGLRTTASSRVAEQLYGL-----------QQVEVLKGPGSLLYGLVLPGGL---V 177 Query: 79 NLVSKRAHEDPISSVTATYLSNSQFGLKGDIGRRFGENQEWGIRVNALYA--DGNTGLSG 136 N+VSKR ++V T S+ + D+ + EN + R+N L + D T Sbjct: 178 NMVSKRPQGSDFANVDVTIGSHDLYQSTVDLNKSLSENGKQAFRINGLISNSDDATDHVW 237 Query: 137 SNQQQSMGSVGLDYNGGRVRWSLDAYTQHEDTRNFRPQ-FSINSALTAMPSAPSGETNLY 195 + S+ LD G R +++ T +++ R Q ++ ++T S P + L+ Sbjct: 238 FKNRYIAPSLSLDL-GARTDFTI--LTSYQERNYVRQQGLPLSGSITPNASGPLARS-LF 293 Query: 196 QGNTMQSDDKAVATRLEYDI----DDSLTAYGAVGYHVAQSSQNFPRATITSVQGATSVT 251 G A TR+ Y + DD T + Y Q + + +I ++ G TS+T Sbjct: 294 IGEPGARPYAANETRIGYSLTHRFDDGWTLNNNLRYQ--QFTMSGQLISINNLTG-TSLT 350 Query: 252 NGYYDQXLPDFFYRM----------------------------------AATGVVSNLYS 277 DQ + M + +SN+Y+ Sbjct: 351 RSAMDQTFEGQTFTMDTNVQRSFATAWGKHEVTLGTDYMNSRELERTLTCSVTPLSNIYN 410 Query: 278 PVSLGALNFARTEPTP------QSQTRLTSFALTDTLSMLDDRLRLIAGLR--RQQVYNH 329 P S GA T+ T + R T F D +S L +R +L+AG+R R Y Sbjct: 411 P-SYGARVVCPTQLTSTNAKLNDTSVRDTGFYARDKIS-LGERWQLLAGVRQDRAATYTT 468 Query: 330 SLVTASQTSNKTAVSPVLG-VVVKPLENLSLYANYTAALSSGGFAAATAVNAGEAFPPYK 388 S +T S + N ++ + ++V+ + Y +Y + + TA + G F P Sbjct: 469 SALTGSHSDNASSATTASAAIMVELWHGVRPYLSYATSFYPN---SGTAFD-GSIFKPET 524 Query: 389 SKQYETGVKVDW--GRVTTTAAVFQIEQANSTTTTINGLSYTSQDGRARIRGLELAAYGE 446 KQ+ETGVKVD GR + A+F + + N T + SY G R +G E++ + Sbjct: 525 GKQWETGVKVDLDEGRTSINFALFDLRRRNVLVTDPDHTSYKMAIGGQRSQGGEISVTSD 584 Query: 447 LQRGLRFNASGTFFAT-------EQSHTANGAADGKEIGAVPKHNFNLGLDWD-TPWLTG 498 L+ GL NA+ ++ A ++S T G+ + VP+HNF + + L+G Sbjct: 585 LRNGLSLNAAYSYTAAIVIDDGGQRSTTV-----GQWLDNVPRHNFTTSARYRFSGELSG 639 Query: 499 LALNTRITNTGAMLYSNSSSLKVPGWTRTDIGARYISKAAGQVITYRANIENLFDKNYW 557 LN + +M+ +N +L PG+ DIG Y ++ + N++N+F+ Y+ Sbjct: 640 WELNGGVRGQ-SMMRTNGYTL--PGYVLADIGVAYNAERWRTAL----NVKNVFNTEYY 691 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,749,009 Number of extensions: 71988 Number of successful extensions: 274 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 19 Length of query: 580 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 490 Effective length of database: 1,193,720 Effective search space: 584922800 Effective search space used: 584922800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)