BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0002.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312365|ref|YP_003776457.1| transcription regulator protein...   133   4e-33
gi|300311177|ref|YP_003775269.1| transcription regulator protein...   132   2e-32

>gi|300312365|ref|YP_003776457.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 158

 Score =  133 bits (335), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 79/100 (79%)

Query: 9   LDQHLCFSLYSTSLKMTQLYKPLLAPLNITYPQYLVMVVLWQQQGLGVKDLAERLQQDSG 68
           LD  LCF++YS SL MT+ YK LLAPL+ITYPQYLVM+VLW++  + V +L  RL  DSG
Sbjct: 20  LDHQLCFAMYSASLAMTKAYKKLLAPLDITYPQYLVMMVLWEKDQVTVSELGGRLFLDSG 79

Query: 69  SITPLVKRLEAEGLITRARDTRDERNVLLSLTPAGEAMRE 108
           ++TPL+KR+EA GL+ R RD  DER VL+SLTPAG A+RE
Sbjct: 80  TLTPLLKRMEAMGLLHRTRDAEDERRVLVSLTPAGRALRE 119


>gi|300311177|ref|YP_003775269.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 153

 Score =  132 bits (331), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 91/138 (65%)

Query: 5   SPPTLDQHLCFSLYSTSLKMTQLYKPLLAPLNITYPQYLVMVVLWQQQGLGVKDLAERLQ 64
           + P LD  LCF+LYSTSL M++LY+ LL  L ITY QYLV++VLW+Q  L V ++ ERL 
Sbjct: 10  AAPLLDAQLCFALYSTSLSMSKLYRKLLRDLGITYSQYLVLMVLWEQDQLTVSEIGERLV 69

Query: 65  QDSGSITPLVKRLEAEGLITRARDTRDERNVLLSLTPAGEAMREAGLRVSEAIAHGCSVT 124
            DS ++TPL+KR+EA+GL+TR R   DER V++SLT  G+ +RE  + +   +      T
Sbjct: 70  LDSATLTPLLKRMEAQGLVTRERAASDERQVVISLTAEGDTLREKAVELPREVLRATEST 129

Query: 125 SAEYQRMMADLAKLNKTL 142
           +AE   +  +L +L   L
Sbjct: 130 AAELAAIKEELMQLRARL 147


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 404,801
Number of extensions: 15030
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)