BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0082.0001.p
         (208 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313655|ref|YP_003777747.1| signal peptide protein [Herbasp...   239   1e-64
gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamil...   178   2e-46
gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamil...    58   7e-10

>gi|300313655|ref|YP_003777747.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score =  239 bits (609), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 157/203 (77%)

Query: 3   RVIPLLQAKGLKVVAVQNPLSSLADDVAATQRVVDAQTGKVVLVGHSWGGTVITQAGTSD 62
           +VIPLLQAKG+KV AVQNPL+SLADDVAA +R +D Q GKVVLVGHSWGGTVIT+AG  D
Sbjct: 54  KVIPLLQAKGVKVTAVQNPLTSLADDVAAARRAIDNQPGKVVLVGHSWGGTVITEAGNHD 113

Query: 63  KIKALVYVAAFAPSEGEATSTLGKDYAVPAGIATLQQDAGGYLWLPADSVAKNFAQDVSP 122
           K+ +LVYVAAFAP  G+AT  LGKD  VP GIA L  D  G+  LP  ++A +FAQDV  
Sbjct: 114 KVASLVYVAAFAPDAGQATGDLGKDLPVPPGIAKLSVDKAGFASLPPAALAADFAQDVPA 173

Query: 123 ATAALIAATQGPIAAKAFGDKTTVAAWRNKPNYYIVSSQDRMIAPELEQAFAKKINATTT 182
             AA++AATQGPIA KAFGDK   AAW+ +P++YIVS++DRMI P LE+AFAK+INA TT
Sbjct: 174 KQAAVMAATQGPIAMKAFGDKVETAAWKTRPSWYIVSTKDRMIQPALERAFAKQINAKTT 233

Query: 183 TLATSHVPMVSQPEKVAEVIFAA 205
            L  SHVP  S+P  VA+VI  A
Sbjct: 234 ELPASHVPQQSRPADVAKVILEA 256


>gi|300313766|ref|YP_003777858.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  178 bits (452), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 135/201 (67%), Gaps = 3/201 (1%)

Query: 3   RVIPLLQAKGLKVVAVQNPLSSLADDVAATQRVVDAQTGKVVLVGHSWGGTVITQAGTSD 62
           +VI LLQ KG +V AVQNPLSSLADDV+AT+RV+D Q  +V+LVGHSWGG VIT AG + 
Sbjct: 39  QVIALLQQKGYRVTAVQNPLSSLADDVSATRRVIDRQPHEVLLVGHSWGGAVITAAGNAS 98

Query: 63  KIKALVYVAAFAPSEGEATSTLGKDYAVPAGIATLQQDAGGYLWL-PADSVAKNFAQDVS 121
           K++ LVY++A AP  G++ + + +    P  ++ +Q DA G +WL  A + A+  A DVS
Sbjct: 99  KVRGLVYLSALAPDSGQSVAQMLQRLHAP--MSGMQPDADGLIWLDDAAAYAQVMAGDVS 156

Query: 122 PATAALIAATQGPIAAKAFGDKTTVAAWRNKPNYYIVSSQDRMIAPELEQAFAKKINATT 181
           P     +AA Q PIAA AFG+    AAWR+KP++Y+++  D+ +   +++  A  + A T
Sbjct: 157 PEQVRHLAAVQQPIAAAAFGEPLVHAAWRDKPSWYLITEGDQALPTAVQRKLATLLGART 216

Query: 182 TTLATSHVPMVSQPEKVAEVI 202
             L +SH+ +VS P+ VA+ I
Sbjct: 217 RQLISSHMSLVSHPQVVADFI 237


>gi|300311758|ref|YP_003775850.1| alpha/beta hydrolase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score = 57.8 bits (138), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 21/198 (10%)

Query: 19  QNPLSSLADDVAATQRVVDAQTGKVVLVGHSWGG--TVITQAGTSDKIKALVYVAAFAPS 76
           Q  LS  AD   A  + + A   +V LVGHS GG          +D +  ++Y+ A+ P 
Sbjct: 48  QVTLSLYAD---AIVKAIKAIGKRVTLVGHSMGGIAVTAAAERAADSLARIIYLCAYVPV 104

Query: 77  EGEATSTLGKDYA---VPAGIATLQQDAGGYLWLPADSVAK--NFAQDVSPATAALIAAT 131
            G++ S L  D A   +P+ +A L  DA   L       A+   F QD +P   A  AA 
Sbjct: 105 NGDSLSAL-SDLAPARLPSPVA-LGHDALAALASDTQPSARVETFMQD-APYAVAHWAAP 161

Query: 132 QGPIAAKAFGDKTTVA-----AWRNKPNYYIVSSQDRMIAPELEQAFAKKINATTT-TLA 185
           Q    A+A    TT       A+   P  YIV ++DR I P L++  A +   +    LA
Sbjct: 162 Q--FRAQAMAPMTTPVQVSEQAYGKLPKSYIVCTRDRAIDPVLQRVMAARSGCSRIKELA 219

Query: 186 TSHVPMVSQPEKVAEVIF 203
           + H P +S+P + AE++ 
Sbjct: 220 SDHSPFLSRPTETAEMLH 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.126    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 632,503
Number of extensions: 25591
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 3
Length of query: 208
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 127
Effective length of database: 1,236,335
Effective search space: 157014545
Effective search space used: 157014545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)