BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0032.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herba...   276   8e-76

>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 599

 Score =  276 bits (707), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 127/137 (92%), Positives = 134/137 (97%)

Query: 5   AIGALRVKIGHSDFGKKNGLFDDVWRPLWVVDFPMFEYDEDNQRWVALHHPFTSPKDGHE 64
           AIGALRVKIGHS+FGKKNGLFDD WRPLWVVDFPMFEYDED QRWVALHHPFTSPKDGHE
Sbjct: 407 AIGALRVKIGHSEFGKKNGLFDDAWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHE 466

Query: 65  DFISTNPAAAIAKAYDLVLNGWEMGGGSVRIHRAEVQSKVFRALKINDEEARLKFGFLLD 124
           DFISTNP AAIAKAYD+VLNGWE+GGGSVRIHRA+VQSKVFRALKI+DEEA+LKFGFLLD
Sbjct: 467 DFISTNPGAAIAKAYDMVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEAKLKFGFLLD 526

Query: 125 ALQYGAPPHGGIAFGLE 141
           ALQYGAPPHGGIAFGL+
Sbjct: 527 ALQYGAPPHGGIAFGLD 543


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 693,616
Number of extensions: 28294
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)