BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0031.p
         (187 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herba...   367   e-103
gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspi...    65   3e-12

>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 599

 Score =  367 bits (941), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/187 (91%), Positives = 180/187 (96%)

Query: 1   VKIGHSDFGKKNGLFDDVWRPLWVVDFPMFEYDEDNQRWVALHHPFTSPKDGHEDFISTN 60
           VKIGHS+FGKKNGLFDD WRPLWVVDFPMFEYDED QRWVALHHPFTSPKDGHEDFISTN
Sbjct: 413 VKIGHSEFGKKNGLFDDAWRPLWVVDFPMFEYDEDGQRWVALHHPFTSPKDGHEDFISTN 472

Query: 61  PAAAIAKAYDLVLNGWEMGGGSVRIHRAEVQSKVFRALKINDEEARLKFGFLLDALQYGA 120
           P AAIAKAYD+VLNGWE+GGGSVRIHRA+VQSKVFRALKI+DEEA+LKFGFLLDALQYGA
Sbjct: 473 PGAAIAKAYDMVLNGWELGGGSVRIHRADVQSKVFRALKIDDEEAKLKFGFLLDALQYGA 532

Query: 121 PPHGGIAFGLDRLVTMMAGAESIRDVIAFPKTQRAQDLLTQAPSAVDEKQLRELHIRLRN 180
           PPHGGIAFGLDRLVTMMAGAESIRDVIAFPKTQRAQ LLT APS VDEKQLRELHIRLRN
Sbjct: 533 PPHGGIAFGLDRLVTMMAGAESIRDVIAFPKTQRAQCLLTHAPSEVDEKQLRELHIRLRN 592

Query: 181 AEPAIKA 187
            EPA+K+
Sbjct: 593 TEPAVKS 599


>gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)

Query: 18  VWRPLWVVDFPMFEYDEDNQRWVALHHPFTSPKDGHEDFISTNPAAAIAKAYDLVLNGWE 77
           +W P +++D+P+                  SP     D +     A I + ++L + G E
Sbjct: 392 LWNPTYIIDYPVE----------------VSPLARASDTV-----AGITERFELFITGRE 430

Query: 78  MGGGSVRIHRAEVQSKVFRAL----KINDEEARLKFGFLLDALQYGAPPHGGIAFGLDRL 133
           +  G   ++ AE Q+  F A        DEEA       + AL+YG PP GG   G+DRL
Sbjct: 431 IANGFSELNDAEDQAARFHAQVAAKDAGDEEAMYYDADYIRALEYGMPPAGGCGIGIDRL 490

Query: 134 VTMMAGAESIRDVIAFPKTQR 154
           + ++  + +IRDVI FP  +R
Sbjct: 491 MMLITDSPNIRDVILFPHLRR 511


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 644,815
Number of extensions: 26086
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 187
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,241,070
Effective search space: 132794490
Effective search space used: 132794490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)