BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0028.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herba...   790   0.0  
gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase [Herbaspi...    68   2e-12

>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 599

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/397 (95%), Positives = 390/397 (98%)

Query: 1   MRTQYCGLTTEALLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRVDVFKNA 60
           MRTQYCGLTTEALLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDR DVFKNA
Sbjct: 1   MRTQYCGLTTEALLGQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRADVFKNA 60

Query: 61  EAVRNEFCLRITGIVRNRPDGTSNANLTSGKIEVLAHDLEVLNPSVTPPFQLDDDNLSET 120
           E+VRNEFCLRITG+VRNRP+GT+NANL SGKIEVL H+LEVLNPSVTPPFQLDDD+LSET
Sbjct: 61  ESVRNEFCLRITGLVRNRPEGTTNANLKSGKIEVLCHELEVLNPSVTPPFQLDDDSLSET 120

Query: 121 TRLTHRVLDLRRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 180
           TRLTHRVLDLRRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP
Sbjct: 121 TRLTHRVLDLRRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 180

Query: 181 SRVNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFM 240
           SRVNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSF+
Sbjct: 181 SRVNAGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFL 240

Query: 241 NEQEIRDLFEGMIRLVFKNVLDIDLPNPFPVMDFATAMGMYGSDKPDMRVKLEFTELTDV 300
           NEQEIRDLFEGMIRLVFKN LDIDLPNPFPVMDFATAMG YGSDKPDMRVKLEFTELTDV
Sbjct: 241 NEQEIRDLFEGMIRLVFKNALDIDLPNPFPVMDFATAMGKYGSDKPDMRVKLEFTELTDV 300

Query: 301 MKDVEFKVFAGAANSEGGRVIGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 360
           MKDVEFKVF+GAANSEGGRV+GLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA
Sbjct: 301 MKDVEFKVFSGAANSEGGRVVGLRVPGGAEMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 360

Query: 361 KGRDGLQSPIVKNLHDAALAAIIEKTGAQDGDLIFGG 397
           KGRDGLQSPIVKN+HDAAL AI+EKTGAQDGDLIF G
Sbjct: 361 KGRDGLQSPIVKNIHDAALNAILEKTGAQDGDLIFFG 397


>gi|300312097|ref|YP_003776189.1| lysyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 513

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 19/264 (7%)

Query: 1   MRTQYCGLTTEALLGQ--TVSLCGWVHRRRDHGGVIFIDLRDREGL-----VQVVCDPDR 53
           +  +Y G   EAL  +  TV++ G +  +R  G   F  L+D  G+     +Q+    D 
Sbjct: 49  LHAKYDGFENEALEAEPVTVTVAGRMMLKRVMGKAAFATLQDASGVRADGRIQLYITRDV 108

Query: 54  VDVFKNAEAVRNEFCL-RITGIVRNRPDGTSNANLTSGKIEVLAHDLEVLNPSVTPPFQL 112
               + A A    + L  I G      +GT     T G++ V    L+++  S+ P    
Sbjct: 109 TG--EEAMAAFKHYDLGDILG-----AEGTLFKTKT-GELSVKVTKLKLITKSLRPLPDK 160

Query: 113 DDDNLSETTRLTHRVLDL-RRPQMQNNLRLRYKVAMEVRKFLDAQGFIDIETPMLTKSTP 171
                 +  +   R +DL    + +   + R      +R+F++  GF+++ETPML    P
Sbjct: 161 FHGLADQEMKYRQRYVDLIMSEETRRTFKARTAAMSSIRRFMETHGFMEVETPML-HPIP 219

Query: 172 EGARDYLVPSRVNAGEF-FALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEF 230
            GA      +  NA +    +  +P+L+ + L+V  F+R ++I + FR+E +     PEF
Sbjct: 220 GGAAAKPFITHHNALDMQMFMRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEF 279

Query: 231 TQIDCETSFMNEQEIRDLFEGMIR 254
           T ++   ++++ Q +    E +IR
Sbjct: 280 TMMEFYAAYVDYQWLMGFTEQVIR 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,216,203
Number of extensions: 51144
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)