BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0024.p
         (210 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum se...   389   e-109

>gi|300309537|ref|YP_003773629.1| glucoamylase [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score =  389 bits (998), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/210 (88%), Positives = 198/210 (94%)

Query: 1   MYDRPDAGMWELRTRSRIHTSSALMSWAACDRLGKIAARLELDERARYWHERADMIGKRI 60
           +Y +PDAGMWELRTRSRIHTSSALMSWAACDRL KIAAR++L ERARYW +RA  IG RI
Sbjct: 386 VYSQPDAGMWELRTRSRIHTSSALMSWAACDRLAKIAARVDLPERARYWGDRAKEIGDRI 445

Query: 61  LTEAWNEERQTYAESFGGRDLDASVLLMVEVGLIAPTDKRFIATVDALEKYLCDGPYMRR 120
           LTEAWNE+RQ YAESFGGRDLDASVLLMVEVGLI+PTD RFI+TV+ALEK LCDGPYMRR
Sbjct: 446 LTEAWNEQRQAYAESFGGRDLDASVLLMVEVGLISPTDPRFISTVEALEKSLCDGPYMRR 505

Query: 121 YEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREIFEAMLAARNHVGLLSEDTHPITG 180
           YEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREIF+AML ARNH+GLLSEDTHP+T 
Sbjct: 506 YEAPDDFGRPETAFNICTFWRIDALARIGRKEQAREIFQAMLDARNHLGLLSEDTHPVTR 565

Query: 181 QMWGNFPQTYSMVGIINCAMRLSASWESVI 210
           QMWGNFPQTYSMVGIINCAMRLSASWE+VI
Sbjct: 566 QMWGNFPQTYSMVGIINCAMRLSASWEAVI 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 700,047
Number of extensions: 28314
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,236,335
Effective search space: 159487215
Effective search space used: 159487215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)