BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0023.p
         (260 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309538|ref|YP_003773630.1| alpha,alpha-trehalose-phosphate...   417   e-118

>gi|300309538|ref|YP_003773630.1| alpha,alpha-trehalose-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/259 (81%), Positives = 227/259 (87%), Gaps = 2/259 (0%)

Query: 1   MSRLVVVSNRLADPRKPAAGGLAVALGETLKRTGGLWFGWSGKVVEDGTPGEGALHVNQA 60
           M RLVVVSNRLADPRKPAAGGLAVALGETLK+TGGLWFGWSGKV+E+GTPGEG + VNQA
Sbjct: 1   MGRLVVVSNRLADPRKPAAGGLAVALGETLKKTGGLWFGWSGKVIENGTPGEGEVRVNQA 60

Query: 61  GPVTLAELDLCAEDHDAYYRGYANGVLWPVFHYRLDLAHFESGHLSGYRRVNQLFARKLM 120
           GPVTLAELDL  EDHDAYYRGYANGVLWPVFHYRLDLAHFE+GHL GYRRVNQLFARKL 
Sbjct: 61  GPVTLAELDLSQEDHDAYYRGYANGVLWPVFHYRLDLAHFEAGHLGGYRRVNQLFARKLF 120

Query: 121 PLLKPDDLIWIHDYHLIPLAAELRAMGCGNRIGFFLHIPLPPQQILAAIPSHEWLMRALF 180
           PLLK DD++WIHDYHLIPLAAELRAMGC  RIGFFLHIPLPP  IL AIPSHEWLMRALF
Sbjct: 121 PLLKRDDIVWIHDYHLIPLAAELRAMGCEARIGFFLHIPLPPPPILTAIPSHEWLMRALF 180

Query: 181 AYDLVGFQTEADLLHFSHYVKAEATAETVGVSQFRAFNSTVQAKAFPIGIDVDDFQRLGR 240
           AYDLVGFQ  ADL HF+ YV+AEATAE VG +QFRAFN TV A AFPIGIDV +FQRLG+
Sbjct: 181 AYDLVGFQNHADLQHFAQYVQAEATAEPVGPNQFRAFNRTVHANAFPIGIDVAEFQRLGQ 240

Query: 241 ARE--RARRAVQASGSRRR 257
           A+E      + +A  SRRR
Sbjct: 241 AKEARDTYESTKAEYSRRR 259


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 873,644
Number of extensions: 38546
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,226,865
Effective search space: 217155105
Effective search space used: 217155105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)