BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0019.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309533|ref|YP_003773625.1| diaminopimelate decarboxylase [...   316   2e-87
gi|300312040|ref|YP_003776132.1| diaminopimelate decarboxylase [...    61   1e-10

>gi|300309533|ref|YP_003773625.1| diaminopimelate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  316 bits (809), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 148/183 (80%), Positives = 163/183 (89%)

Query: 1   LLEALDKVIELIDQLESEGIAIHHLDIGGGIGITYDDEQPVPVGDYLGRLFARVEAWRKE 60
           LLEALDK+I+++D LE+EGI IHHLDIGGGIGI YDDEQPV +GDYL R+FARV+AWR  
Sbjct: 218 LLEALDKIIDMVDALEAEGIPIHHLDIGGGIGIRYDDEQPVAIGDYLARVFARVDAWRAS 277

Query: 61  KYAGRAIKVMFEPGRSIVGNAGVLLTEVQYLKHGETKNFAVVDAAMNDLMRPALYEAWHG 120
           KY GR I+VMFEPGRS+VGNAG+LLTEVQYLKHGE KNFAVVDAAMNDLMRPA+YEAWHG
Sbjct: 278 KYQGRPIQVMFEPGRSVVGNAGLLLTEVQYLKHGEGKNFAVVDAAMNDLMRPAMYEAWHG 337

Query: 121 VQVVQQRQDAARTYDVVGPVCESGDWLAHSRELAIEPGDLLALMSAGAYGMTMASNYNTR 180
           V+ V++     R YDVVGPVCESGDWLA SRELAI  GDLLALMSAGAYGMTMASNYNTR
Sbjct: 338 VKTVKENAGQPRIYDVVGPVCESGDWLARSRELAIGEGDLLALMSAGAYGMTMASNYNTR 397

Query: 181 GRA 183
           GRA
Sbjct: 398 GRA 400


>gi|300312040|ref|YP_003776132.1| diaminopimelate decarboxylase
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 22/192 (11%)

Query: 1   LLEALDKVIELIDQLESE-GIAIHHLDIGGGIGITY-DDEQPV---PVGDYLGRLFARVE 55
           ++ A     EL  QL  E G+++  L+IGGG GI Y   E+ +   P+G +L +   R+ 
Sbjct: 220 IMAAQSSSFELALQLAGEAGLSLRVLNIGGGFGIPYFPGERALEIAPIGAHLAQWLPRLR 279

Query: 56  AWRKEKYAGRAIKVMFEPGRSIVGNAGVLLTEVQYLKHGETKNFAVVDAAMNDLMRPA-- 113
           A   +      ++V+ E GR +VG AG+ ++ V   K    + F VVD  ++  +  +  
Sbjct: 280 ALHPQ------LRVVMEMGRYLVGEAGLYVSRVIDRKQSRGEVFLVVDGGLHHHLAASGN 333

Query: 114 ----LYEAWHGVQVVQQRQDAA----RTYDVVGPVCESGDWLAHSREL-AIEPGDLLALM 164
               + + +    V QQ Q +         VVGP+C   D LA    L A   GDL+ + 
Sbjct: 334 FGQVIRKNYPVTIVPQQPQRSGGGTTERVSVVGPLCTPLDVLAAQMLLPAAAVGDLVVVF 393

Query: 165 SAGAYGMTMASN 176
            +GAYG++ +  
Sbjct: 394 QSGAYGLSASPT 405


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,925
Number of extensions: 31754
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)