BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0009.p
         (561 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310305|ref|YP_003774397.1| sugar ABC transporter periplasm...  1097   0.0  

>gi|300310305|ref|YP_003774397.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 582

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/556 (94%), Positives = 544/556 (97%)

Query: 6   WADTKSAEKWIDTEFKPSTLSRQQQLSEMQWFIDAAAKLKAKGVKEIHVVSETLDTHAYE 65
           WAD K+AEKW+D+EF+PSTLSR QQ+SEMQWFIDAAAKLKAKGVKEIHVVSETLDTHAYE
Sbjct: 27  WADIKAAEKWVDSEFQPSTLSRPQQVSEMQWFIDAAAKLKAKGVKEIHVVSETLDTHAYE 86

Query: 66  SKTLAKAFEEITGIKVKHDVIQEGDVVEKMQTSLQSGKSIYDGWVNDSDLIGTHYRNGQT 125
           SKTLAKAFEEITGIKV HDVIQEGDVVEKMQTSLQSGKSIYDGWVNDSDLIGTHYRNGQT
Sbjct: 87  SKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSLQSGKSIYDGWVNDSDLIGTHYRNGQT 146

Query: 126 VVLSDYMAGPGKEYTNPGLDLKDFIGTSFTTAPDGKLYQLPDQQFANLYWFRADWFARKD 185
           VVL+DYMAGPGKEYTNPGLDLKDFIGTSFTTAPDGKLYQLPDQQFANLYWFRADWFARKD
Sbjct: 147 VVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPDGKLYQLPDQQFANLYWFRADWFARKD 206

Query: 186 LQDKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKELDGKKIFGHMDYGKKDPSLGWRFTD 245
           LQ+KFKAKYGYELGVPQNWSAYEDIAAFFTNDVKELDGKKI+GHMDYGKKDPSLGWRFTD
Sbjct: 207 LQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVKELDGKKIYGHMDYGKKDPSLGWRFTD 266

Query: 246 AWLSMAGAADKGLPNGLPVDEWGIRVAADKCTPVGASMSRGGATNSPAAVYALTKYLDWM 305
           AWLSMAGAADKGLPNGLPVDEWGIRVA DKCTPVGAS++RGGATNSPAAVYALTKYLDWM
Sbjct: 267 AWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYLDWM 326

Query: 306 KKYAPPEALGMTFSEAGPVPAQGHIAQQVFWYSAFTAGMTKQGLPVVNTDGSPKWRMAPG 365
           KKYAPPEALGMTFSEAGPVPAQGHIAQQ+FWYSAFTA MTKQGLPVVN DGSPKWRMAPG
Sbjct: 327 KKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSAFTASMTKQGLPVVNADGSPKWRMAPG 386

Query: 366 PHGPYWKEGMQNGYQDVGSWTFLKSTPPDQMAAAWLYGQFVTSKTVSLKKSIVGLTFIRD 425
           PHGPYWK+GMQNGYQDVGSWTFLKSTPPDQMAAAWLY QF TSKTVSLKKSIVG+TFIRD
Sbjct: 387 PHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAAWLYAQFTTSKTVSLKKSIVGVTFIRD 446

Query: 426 SDIRSEYFTKNAAKYGGLIEFYRSPARVAWTPTGNNVPDYPKMAQLWWKNISTAISGEKT 485
           SDIRS+YFTKNAAKYGGLIEFYRSPARVAWTPTG NVPDYPKMAQ+WWKNIS+AISGEKT
Sbjct: 447 SDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTGTNVPDYPKMAQIWWKNISSAISGEKT 506

Query: 486 PQGAMDNLAEEMDGIMARLQRAGMKNCAPKLNDKKDPATWMSDKGAPWTKLANEKPKGET 545
           PQGAMDNLA+EMDGIMARLQRAGMK CAPKLN KKDPATW+SDKGAPW KLANEKPKGET
Sbjct: 507 PQGAMDNLADEMDGIMARLQRAGMKQCAPKLNPKKDPATWLSDKGAPWAKLANEKPKGET 566

Query: 546 IPYDKLLQAWKDGKVR 561
           IPYDKLLQAWKDG+VR
Sbjct: 567 IPYDKLLQAWKDGRVR 582


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,997,536
Number of extensions: 90851
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 471
Effective length of database: 1,193,720
Effective search space: 562242120
Effective search space used: 562242120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)