BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0005.p
         (113 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [H...   112   9e-27
gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H...    65   1e-12
gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H...    62   1e-11
gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H...    60   4e-11
gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H...    57   4e-10

>gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  112 bits (279), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 54/55 (98%)

Query: 1   VIDPHMKWQLRQKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGR 55
           VIDPHMKW+LRQKLK+IHHQLKLTLIYVTHDQVEALTFADEVVVMT GKVVQQG+
Sbjct: 170 VIDPHMKWELRQKLKEIHHQLKLTLIYVTHDQVEALTFADEVVVMTEGKVVQQGK 224


>gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 361

 Score = 65.1 bits (157), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 8/85 (9%)

Query: 2   IDPHMKWQLRQKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGR------ 55
           +D  ++ Q+R ++K++H +LK T IYVTHDQ+EA+T AD++VVM +G V Q+GR      
Sbjct: 164 LDAKLRVQMRTEIKELHQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYD 223

Query: 56  --ARRSQRQRRAGPASRHQPAAHRR 78
             A          PA    PA  RR
Sbjct: 224 YPANLFVAGFIGSPAMNFIPATLRR 248


>gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 406

 Score = 62.0 bits (149), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 43/63 (68%)

Query: 2   IDPHMKWQLRQKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGRARRSQR 61
           +D  ++ QLR  +K++H +L+ T +YVTHDQ+EA+T AD V++M +G++VQ G      R
Sbjct: 165 LDAKLRAQLRGDIKRLHQRLRTTTVYVTHDQLEAMTLADRVILMQDGRIVQAGSPAELYR 224

Query: 62  QRR 64
             R
Sbjct: 225 YPR 227


>gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score = 60.1 bits (144), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 4/70 (5%)

Query: 2   IDPHMKWQLRQKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQGRARRSQR 61
           +D  ++ ++R +  ++H  LK T+IYVTHDQ+EA+T AD++VV++ G++ Q G    S +
Sbjct: 164 LDAALRVKMRLEFAKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVG----SPQ 219

Query: 62  QRRAGPASRH 71
           Q    PA+R 
Sbjct: 220 QLYHHPANRF 229


>gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score = 56.6 bits (135), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 38/53 (71%)

Query: 2   IDPHMKWQLRQKLKQIHHQLKLTLIYVTHDQVEALTFADEVVVMTNGKVVQQG 54
           +D  ++ Q R ++ ++H QL  T++YVTHDQVEA+T  D++VVM  G++ Q G
Sbjct: 165 LDAALRVQTRLEIAKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAG 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 312,074
Number of extensions: 8873
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 7
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 7
Length of query: 113
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 40
Effective length of database: 1,274,215
Effective search space: 50968600
Effective search space used: 50968600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)