BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0004.p (181 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [H... 233 6e-63 gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [H... 90 1e-19 gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 88 5e-19 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 87 6e-19 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 86 1e-18 >gi|300310301|ref|YP_003774393.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 233 bits (594), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 107/120 (89%), Positives = 114/120 (95%) Query: 1 MARIEFRNLGHAYGPNPASLQDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MARIEF+NLGHAY NPASL+DYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLL Sbjct: 1 MARIEFKNLGHAYSGNPASLKDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLQ 60 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRART 120 PSEGQVLFDG+DMT+M TR+RNIAQVFQFPVLYDTMSVFDNLAFPLRNRK+AE EV+AR Sbjct: 61 PSEGQVLFDGRDMTRMATRDRNIAQVFQFPVLYDTMSVFDNLAFPLRNRKIAEREVQARV 120 >gi|300312694|ref|YP_003776786.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 5/120 (4%) Query: 1 MARIEFRNLGHAYGPNPASLQDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA I + L Y P L P+++ DG LLGPSGCGKST+L +I+GL Sbjct: 1 MADIHCQALAKHYAGGPP-----VLHPLDLHIGDGEFVVLLGPSGCGKSTMLRMIAGLED 55 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRART 120 S G + G + +P RERN+A VFQ LY MSV+DN+AF LR K +E+ R Sbjct: 56 ISGGTLRIGGTVVNDLPARERNVAMVFQNYALYPHMSVYDNIAFGLRRLKRPAAEIDRRV 115 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 87.8 bits (216), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 64/96 (66%) Query: 25 LQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLVPSEGQVLFDGKDMTQMPTRERNIA 84 L P+++ GG LLGP+ GK++L+ II+GL P+ G+VL DG+D+T + RERN+A Sbjct: 18 LYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVLVDGQDVTGVGVRERNLA 77 Query: 85 QVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRART 120 V+Q + Y ++VF+N+A PLR +K E E+ R Sbjct: 78 MVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRV 113 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 87.4 bits (215), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/84 (51%), Positives = 56/84 (66%) Query: 24 ALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLVPSEGQVLFDGKDMTQMPTRERNI 83 AL +++ + G ALLGPSGCGK+TLL II+GL P GQVL DG+D + RER + Sbjct: 17 ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDASARHVRERQV 76 Query: 84 AQVFQFPVLYDTMSVFDNLAFPLR 107 VFQ L+ M+VF+N+AF LR Sbjct: 77 GFVFQHYALFKHMTVFENIAFGLR 100 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 86.3 bits (212), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 7/142 (4%) Query: 1 MARIEFRNLGHAYGPNPASLQDYALQPMNMVWEDGGAYALLGPSGCGKSTLLNIISGLLV 60 MA + RNL Y N ++ +N+ EDG +GPSGCGKSTLL +I+GL Sbjct: 1 MAAVSIRNLAKRYDDNEV------MRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEE 54 Query: 61 PSEGQVLFDGKDMTQMPTRERNIAQVFQFPVLYDTMSVFDNLAFPLRNRKVAESEVRART 120 S+G + + M ++P +R +A VFQ LY MS++DN+AF L+ +++E+ A Sbjct: 55 ISDGDLDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAV 114 Query: 121 YFSGSRTCXAPRACMKSPRSWS 142 + ++ + PR+ S Sbjct: 115 QHA-AKILHIDHLLDRKPRALS 135 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.130 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 497,175 Number of extensions: 17859 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 242 Number of HSP's successfully gapped: 46 Length of query: 181 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 102 Effective length of database: 1,245,805 Effective search space: 127072110 Effective search space used: 127072110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)