BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0003.p (352 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen... 351 5e-98 gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen... 257 9e-70 gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [H... 219 3e-58 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 96 6e-21 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 93 4e-20 >gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 510 Score = 351 bits (901), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 163/204 (79%), Positives = 179/204 (87%) Query: 5 KHNRIXARAIVNAAGPWTAQFADAVPGASKSYGLRLIKGSHIVVKRLFDHPYAYIFQNPD 64 + + ARAIVNAAGPW A+FA AVP A LRLIKGSHIVVKR+FDHPYAYIFQNPD Sbjct: 199 QQEEVRARAIVNAAGPWAARFAQAVPQAKSGRSLRLIKGSHIVVKRMFDHPYAYIFQNPD 258 Query: 65 KRIIFAIPYQDDFTLIGTTDLEYTGDAGKVEISAEEIDYLCDMANRYFTRQISAQDVVWT 124 KRIIFAIPYQ++FTLIGTTDLEY GDAGKVEI A EIDYLCDMANRYF RQI +DVVWT Sbjct: 259 KRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAAEIDYLCDMANRYFKRQIGKEDVVWT 318 Query: 125 YSGVRPLLDDNSSNASAVTRDYLLECNDSGAPMLNVWGGKITTYRKLAEEALAILSPRLG 184 YSGVRPLLDD++ NASA+TRDYLLEC+D+GAPMLNVWGGKITTYRKLAEEALA+L+P LG Sbjct: 319 YSGVRPLLDDSAENASAITRDYLLECDDAGAPMLNVWGGKITTYRKLAEEALAMLAPHLG 378 Query: 185 LKAPSWTADAPLPGGDLEQAGKLV 208 + SWTA APLPGGDLEQ GK+V Sbjct: 379 ASSQSWTAGAPLPGGDLEQPGKMV 402 >gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 534 Score = 257 bits (657), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 129/228 (56%), Positives = 162/228 (71%), Gaps = 9/228 (3%) Query: 8 RIXARAIVNAAGPWTAQFADAVPGASKSYGLRLIKGSHIVVKRLFDHPYAYIFQNPDKRI 67 ++ AR +VNAAGPW AQF S +RL+KGSHIVV RLF+H +AYIFQNPD RI Sbjct: 209 QVRARCVVNAAGPWVAQFLGGAAHVHSSKSVRLVKGSHIVVPRLFEHDHAYIFQNPDGRI 268 Query: 68 IFAIPYQDDFTLIGTTDLEYTGDAGKVEISAEEIDYLCDMANRYFTRQISAQDVVWTYSG 127 +FAIPY+ DFTLIGTTD+EY G V ISA+E YLC +ANRYF + I+ DVVW+YSG Sbjct: 269 VFAIPYEQDFTLIGTTDIEYQGRVEDVAISADETAYLCQLANRYFEKPITPDDVVWSYSG 328 Query: 128 VRPLLDDNSSNASAVTRDYLLECNDSGAPMLNVWGGKITTYRKLAEEALAILSPRLGLKA 187 VRPLL+D +++ASAVTRDY L+ N GAP+L+++GGKITT+RKLAEEA+ +++P LG + Sbjct: 329 VRPLLEDAAADASAVTRDYQLDLNLQGAPLLSIFGGKITTFRKLAEEAVDMIAPVLGNQR 388 Query: 188 PSWTADAPLPGGDLEQAGKLVRS---------GGQQQRTALARALIKR 226 +WT LPGGDL A RS G QQQ L AL++R Sbjct: 389 GAWTEHGCLPGGDLYGAQPSNRSVRQFDQYVQGLQQQYPWLPAALLQR 436 >gi|300310300|ref|YP_003774392.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 366 Score = 219 bits (557), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 109/133 (81%), Positives = 118/133 (88%), Gaps = 4/133 (3%) Query: 210 SGGQQQRTALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFTNGDTTVVYATTEP 269 SGGQQQR ALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLF GDTTVVYATTEP Sbjct: 134 SGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFATGDTTVVYATTEP 193 Query: 270 QEALLLGGHTAVMHAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAATASAN----G 325 QEALLLGGHTAVMH GRLLQF PTL+LFN+PAST+VAAIFNDPPMN+L ATA A+ Sbjct: 194 QEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNLLEATAIASAPGVA 253 Query: 326 SVTLDDGSVLTVA 338 ++ + DGSVL +A Sbjct: 254 AICMSDGSVLEIA 266 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 95.5 bits (236), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 49/117 (41%), Positives = 72/117 (61%) Query: 210 SGGQQQRTALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFTNGDTTVVYATTEP 269 SGGQ+QR A+ RA++++ + L DEPL NLD KLR ++R E+ L + TT +Y T + Sbjct: 139 SGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQKLHASLRTTSLYVTHDQ 198 Query: 270 QEALLLGGHTAVMHAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAATASANGS 326 EA+ LG VM+ G Q G +++ PA+T VA+ PPMN+L SA+G+ Sbjct: 199 VEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSPPMNLLQGKLSADGA 255 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 49/118 (41%), Positives = 68/118 (57%) Query: 210 SGGQQQRTALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFTNGDTTVVYATTEP 269 SGGQQQR AL RA+I AP+ L+DEPL NLD +LR+E+R E+ +L + T+VY T + Sbjct: 135 SGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTHDQ 194 Query: 270 QEALLLGGHTAVMHAGRLLQFGPTLQLFNAPASTEVAAIFNDPPMNMLAATASANGSV 327 EA+ + ++ GR+ Q L+ PA+ A PPMN+L A G V Sbjct: 195 TEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIGTPPMNLLPLEPHAEGLV 252 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,048,783 Number of extensions: 43109 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 311 Number of HSP's successfully gapped: 25 Length of query: 352 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 266 Effective length of database: 1,212,660 Effective search space: 322567560 Effective search space used: 322567560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)