BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0001.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen...   253   6e-69
gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen...   229   9e-62

>gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  253 bits (647), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/140 (86%), Positives = 129/140 (92%)

Query: 1   VILCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRAAPHIIWPLRFV 60
           V+LCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLR+APHIIWPLRFV
Sbjct: 30  VLLCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRSAPHIIWPLRFV 89

Query: 61  MPHDAGQRPAWLIRAGLLMYDYLAKREILPASYGLKLDQHAAGKPLKGGYRRGFVYSDGW 120
           MPHDA QRPAW+IRAGL MYD+LAKREILP S G  L +H AG+PLKG YR+GFVYSDGW
Sbjct: 90  MPHDANQRPAWMIRAGLFMYDHLAKREILPPSEGANLARHDAGQPLKGDYRKGFVYSDGW 149

Query: 121 VDDARLVALNALDASERGAR 140
           VDDARLV LNA+DA ERGAR
Sbjct: 150 VDDARLVVLNAMDAQERGAR 169


>gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  229 bits (585), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 107/139 (76%), Positives = 123/139 (88%)

Query: 1   VILCEQHDLAQHTSSASTKLIHGGLRYLEYYEFKLVRKALQEREVLLRAAPHIIWPLRFV 60
           V LCEQHDLAQHTSS+S+KLIHGGLRYLE+YEF LVRKAL EREVLLR+APHI+WPLRFV
Sbjct: 40  VALCEQHDLAQHTSSSSSKLIHGGLRYLEHYEFGLVRKALIEREVLLRSAPHIMWPLRFV 99

Query: 61  MPHDAGQRPAWLIRAGLLMYDYLAKREILPASYGLKLDQHAAGKPLKGGYRRGFVYSDGW 120
           MPHD GQRPAWLIR G+ +YD+LA+RE+LP S  L L +HA+G PLK  + RGFVYSDGW
Sbjct: 100 MPHDQGQRPAWLIRLGMFLYDHLARRELLPGSRALDLRRHASGAPLKAQFTRGFVYSDGW 159

Query: 121 VDDARLVALNALDASERGA 139
           VDDARLV LNA+DA+E+GA
Sbjct: 160 VDDARLVVLNAMDAAEKGA 178


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 555,959
Number of extensions: 20524
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)