BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0019.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogen...   265   4e-72
gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogen...   256   2e-69

>gi|300314008|ref|YP_003778100.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  265 bits (677), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 138/262 (52%), Positives = 166/262 (63%), Gaps = 4/262 (1%)

Query: 23  GVXAEALAEREHLLNIAPHIAWPLRFVMPHVKGLRPRWMIRLGLWMYDHIGGRITLPHSA 82
           G+  +AL ERE LL  APHI WPLRFVMPH +G RP W+IRLG+++YDH+  R  LP S 
Sbjct: 73  GLVRKALIEREVLLRSAPHIMWPLRFVMPHDQGQRPAWLIRLGMFLYDHLARRELLPGSR 132

Query: 83  GIKLDQMNAPSGLRMDITRGFAYSDAWVDDARLVILNLLSAQEHGADIFARTRLVDARRS 142
            + L +  + + L+   TRGF YSD WVDDARLV+LN + A E GA I  RTR     R 
Sbjct: 133 ALDLRRHASGAPLKAQFTRGFVYSDGWVDDARLVVLNAMDAAEKGAHIMTRTRCESLTRQ 192

Query: 143 NGLWQCEVENTVTGTREQLTARAVVNTAGPWVAKIDQLLNPARQGKVHAAVKLVRGSHIV 202
           +  WQ  V     G   Q+ AR VVN AGPWVA   Q L  A       +V+LV+GSHIV
Sbjct: 193 DNGWQA-VLRREDGHAMQVRARCVVNAAGPWVA---QFLGGAAHVHSSKSVRLVKGSHIV 248

Query: 203 VPRLFAGEHAYILQNDDKRIVFMIPYEDKFTLIGTTDVPQENMDNGATISTDEEAYLLRA 262
           VPRLF  +HAYI QN D RIVF IPYE  FTLIGTTD+  +       IS DE AYL + 
Sbjct: 249 VPRLFEHDHAYIFQNPDGRIVFAIPYEQDFTLIGTTDIEYQGRVEDVAISADETAYLCQL 308

Query: 263 VNQYLAKPISDADIVWRYAGVR 284
            N+Y  KPI+  D+VW Y+GVR
Sbjct: 309 ANRYFEKPITPDDVVWSYSGVR 330


>gi|300310299|ref|YP_003774391.1| glycerol-3-phosphate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 510

 Score =  256 bits (653), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 128/260 (49%), Positives = 166/260 (63%), Gaps = 5/260 (1%)

Query: 27  EALAEREHLLNIAPHIAWPLRFVMPHVKGLRPRWMIRLGLWMYDHIGGRITLPHSAGIKL 86
           +AL ERE LL  APHI WPLRFVMPH    RP WMIR GL+MYDH+  R  LP S G  L
Sbjct: 67  KALQEREVLLRSAPHIIWPLRFVMPHDANQRPAWMIRAGLFMYDHLAKREILPPSEGANL 126

Query: 87  DQMNAPSGLRMDITRGFAYSDAWVDDARLVILNLLSAQEHGADIFARTRLVDARRSNGLW 146
            + +A   L+ D  +GF YSD WVDDARLV+LN + AQE GA I  RT+ + ARR   +W
Sbjct: 127 ARHDAGQPLKGDYRKGFVYSDGWVDDARLVVLNAMDAQERGARILTRTKCISARREGDIW 186

Query: 147 QCEVENTVTG--TREQLTARAVVNTAGPWVAKIDQLLNPARQGKVHAAVKLVRGSHIVVP 204
              +E+   G   +E++ ARA+VN AGPW A+  Q +  A+ G+   +++L++GSHIVV 
Sbjct: 187 HAVLEHQREGGVQQEEVRARAIVNAAGPWAARFAQAVPQAKSGR---SLRLIKGSHIVVK 243

Query: 205 RLFAGEHAYILQNDDKRIVFMIPYEDKFTLIGTTDVPQENMDNGATISTDEEAYLLRAVN 264
           R+F   +AYI QN DKRI+F IPY+++FTLIGTTD+          I   E  YL    N
Sbjct: 244 RMFDHPYAYIFQNPDKRIIFAIPYQEEFTLIGTTDLEYHGDAGKVEIDAAEIDYLCDMAN 303

Query: 265 QYLAKPISDADIVWRYAGVR 284
           +Y  + I   D+VW Y+GVR
Sbjct: 304 RYFKRQIGKEDVVWTYSGVR 323


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,492
Number of extensions: 33552
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 2
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)