BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0014.p
         (162 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312384|ref|YP_003776476.1| GNAT family acetyltransferase [...   246   9e-67

>gi|300312384|ref|YP_003776476.1| GNAT family acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 159

 Score =  246 bits (627), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 134/158 (84%)

Query: 5   DLLIREATVDDAELIAELTRASWANKVAPSSSGHREEPKRVAEDLQRGGGFVLLRDDVPA 64
           +L+IREAT +DA LIAELTR SWANKVAPSSSGHRE P  V EDLQ GG F+LL  + PA
Sbjct: 2   NLVIREATSEDASLIAELTRHSWANKVAPSSSGHREAPDHVQEDLQHGGAFILLSGETPA 61

Query: 65  GSVRWLPLDTELGVWEILRMGILPGYRGERLSQHLMEALIHRALAADIGELRLAVRSDQE 124
           GSVRWLPLDTE  VWEI RMGI P +RGERLSQHLMEALIHRA +AD+ ELRLAVR+DQ 
Sbjct: 62  GSVRWLPLDTESDVWEIRRMGIAPAFRGERLSQHLMEALIHRAQSADVRELRLAVRTDQA 121

Query: 125 QLLDVYAAFGFEIAPELEYTRANPMEPAPIVMRRWLRN 162
           QL+D+YAAFGFEIAPELEYTRANP E  PIVMRR +R+
Sbjct: 122 QLVDLYAAFGFEIAPELEYTRANPQEAPPIVMRRVMRH 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,956
Number of extensions: 25162
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 84
Effective length of database: 1,250,540
Effective search space: 105045360
Effective search space used: 105045360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)