BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0013.p
         (623 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase [Herb...  1151   0.0  

>gi|300312383|ref|YP_003776475.1| methionyl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 690

 Score = 1151 bits (2978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/626 (89%), Positives = 593/626 (94%), Gaps = 7/626 (1%)

Query: 1   VTPQQFVADISAGRKQYLDGFHIAFDNWSSTDSKENHQLSQDIYRALRDDAKLITTKTID 60
           +TPQQFVA+I+AGRKQYLDGFHIAFDNWSSTDS ENH+LSQ+IYRALRD+AKLI+TKTID
Sbjct: 69  ITPQQFVANIAAGRKQYLDGFHIAFDNWSSTDSPENHELSQEIYRALRDEAKLISTKTID 128

Query: 61  QFFDPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYAPTDLKNPYSTLSGATPVMK 120
           QF+DPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVY+PTDLKNPYSTLSGATPVMK
Sbjct: 129 QFYDPVKNMFLPDRYIKGECPKCGTKDQYGDSCENCSAVYSPTDLKNPYSTLSGATPVMK 188

Query: 121 SSEHFFFKLSDPKCVAFLREWALDNNRLQPEVANKCREWLDGKDEENTGLGDWDISRDAP 180
           SSEHFFFKLSDPKCVAFLREWALD+NRLQPEVANK +EWLDG+     GLGDWDISRDAP
Sbjct: 189 SSEHFFFKLSDPKCVAFLREWALDSNRLQPEVANKAKEWLDGE----GGLGDWDISRDAP 244

Query: 181 YFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFEKTGRDFDAFMADDKTEQYHFIGKDITY 240
           YFGIEIPDAPGKYFYVWLDAPIGYLASLKNYF KTGRDFDAFMADDKTEQYHFIGKDITY
Sbjct: 245 YFGIEIPDAPGKYFYVWLDAPIGYLASLKNYFAKTGRDFDAFMADDKTEQYHFIGKDITY 304

Query: 241 FHTLFWPAMLKFAGRKTPTNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYY 300
           FHTLFWPAMLKFAGRKTP NVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYY
Sbjct: 305 FHTLFWPAMLKFAGRKTPNNVFAHGFITVSGEKMSKSRGTGISPLRYLDIGMNPEWLRYY 364

Query: 301 IAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFDGKLSTAWATADDA 360
           IAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRF+G++ST WATADDA
Sbjct: 365 IAAKLNAKVEDVDFNPDDFVARVNADLIGKYVNIASRAAGFIAKRFEGRVSTQWATADDA 424

Query: 361 FLAKLRGIAPDILALYEQREYGKALRAIMEQADVINAYVDANKPWELAKDTAKDAQLHEV 420
           FLAKLRG+A +I +LYEQREYGKALR +MEQAD INAYVDANKPWELAKD+A+DAQLHEV
Sbjct: 425 FLAKLRGVADEIRSLYEQREYGKALRLVMEQADAINAYVDANKPWELAKDSARDAQLHEV 484

Query: 421 CSRLLEAFRILTVYLKPVLPQLAAQVEGFLNVAPFAWADVQTALPDGHVINAYAHLMQRV 480
           CSRLLEAFRILTVYLKPVLPQLAAQVE FL V PF W DV   L DGHVI+AY+HLMQRV
Sbjct: 485 CSRLLEAFRILTVYLKPVLPQLAAQVEAFLQVQPFQWGDVAMPLADGHVIHAYSHLMQRV 544

Query: 481 DPKMLDALF---DAPEVAAAPAETADAGIEELAPEISIDDFAKIDLRIAKIVNCEAVEGS 537
           DPKMLDALF   +AP  AA+ A  A++ IE+LAPEI+IDDFAK+DLRIAKIVNCEAVEGS
Sbjct: 545 DPKMLDALFEAPEAPAAAASEAAAAESAIEDLAPEITIDDFAKVDLRIAKIVNCEAVEGS 604

Query: 538 TKLLRLTLDAGEGKTRNVFSGIASAYKPEELVGKLTVMVANLAPRKMKFGISEGMVLAAS 597
           TKLLRLTLDAGEG+TRNVFSGIASAYKPEELVGKLT+MVANLAPRKMKFG+SEGMVLAAS
Sbjct: 605 TKLLRLTLDAGEGRTRNVFSGIASAYKPEELVGKLTLMVANLAPRKMKFGLSEGMVLAAS 664

Query: 598 AKDEKAKPGIYVLNPWPGAEPGMRVR 623
           AKDEK+ PGIY+LNPWPGAEPGMRVR
Sbjct: 665 AKDEKSHPGIYILNPWPGAEPGMRVR 690


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,942,217
Number of extensions: 80224
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 532
Effective length of database: 1,188,985
Effective search space: 632540020
Effective search space used: 632540020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)